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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G145470
Reference: TK1151 Chr: Chr06 Coordinates: 38142807-38144351 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1263 bp · TkA06G145470|TK1151|cDNA

ATGGGTAGCGACAAAGACGAGGTGACATGGAATTCAATGATCGTAGCTCATAGTCAGCATCGAGAAGGATTAGAAGCGCTTGAATTGTATCGGAAAATGGTGTATTTGGAGTTACCAATTGATACGTTCAGTTTCGCCAGCGTTTTAACTGCATTCACCTGTCTAGAAGATTTACGTGCAAGCTCCAATCTCTCCTCACCATCTCAAGGCAAGCAGCTTCATTCTCTCGCACTCAAATCCCACATCCCATCAAACCAAAT...

CDS

Download CDS FASTA

1263 bp · TkA06G145470|TK1151|CDS

ATGGGTAGCGACAAAGACGAGGTGACATGGAATTCAATGATCGTAGCTCATAGTCAGCATCGAGAAGGATTAGAAGCGCTTGAATTGTATCGGAAAATGGTGTATTTGGAGTTACCAATTGATACGTTCAGTTTCGCCAGCGTTTTAACTGCATTCACCTGTCTAGAAGATTTACGTGCAAGCTCCAATCTCTCCTCACCATCTCAAGGCAAGCAGCTTCATTCTCTCGCACTCAAATCCCACATCCCATCAAACCAAAT...

Protein

Download Protein FASTA

420 aa · TkA06G145470|TK1151|PROTEIN

MGSDKDEVTWNSMIVAHSQHREGLEALELYRKMVYLELPIDTFSFASVLTAFTCLEDLRASSNLSSPSQGKQLHSLALKSHIPSNQISIHNALITMYSKCGNLQDARKVFDKMPEHNTVTFNSLITGYSNHGLQTEALHLFHHMLNTNISPTPITFISILSACAHTGKISQAKNYFNSMTESFNIKPTEEHYSCMIDLLGRAGKLNEAEKLIKSMPVKPSTVSWGALLGSCRIHGNLELAEKAAHQCVVLEPSNASPYVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G145470
TK1151 IDTkA06G145470
OH-1004 IDLXL04_024423
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)80.400
Protein coverage (%)TK1151 100.000 / OH-1004 71.972
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G145470
LocationChr06:38142807-38144351 (+)
DescriptionSimilar to PCMP-H79: Pentatricopeptide repeat-containing protein At3g49710
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g49710 Pentatricopeptide repeat-containing protein At3g49710. No verified direct reference in this release
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024423 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G11290
ath:AT2G22070
ath:AT3G02010
ath:AT3G49710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.591
Rank 1 · TkA06G145470 · TK1151
Plastid0.213
Rank 2 · TkA06G145470 · TK1151
Nucleus0.098
Rank 3 · TkA06G145470 · TK1151
Cytoplasm0.042
Rank 4 · TkA06G145470 · TK1151
Cell membrane0.006
Rank 5 · TkA06G145470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12854PPR_13-34 aa
PF13041PPR_26-52 aa
PF01535PPR8-34 aa
PF00515TPR_110-33 aa
PF13428TPR_1412-33 aa
PF17177PPR_long18-182 aa
PF07719TPR_225-33 aa
PF13812PPR_329-54 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G145470PF12854PPR_13341.5e-2382.9
TkA06G145470PF13041PPR_26524.7e-35120.2
TkA06G145470PF01535PPR8341.7e-37125.7
TkA06G145470PF00515TPR_110330.09813.2
TkA06G145470PF13428TPR_1412330.0008420.5
TkA06G145470PF17177PPR_long181821.8e-0834.8
TkA06G145470PF07719TPR_225330.01516.1
TkA06G145470PF13812PPR_329545.4e-1555.9
TkA06G145470PF23276TPR_2436571.3e-0732.3
TkA06G145470PF25058ARM_TT21541130.003717.9
TkA06G145470PF12816TPR_Vps8721630.09812.9
TkA06G145470PF00637Clathrin851420.2112.1
TkA06G145470PF23276TPR_24861121.3e-0732.3
TkA06G145470PF29070MSC6_N871145.2e-1143.0
TkA06G145470PF25064ARM_TT21_5th891180.01916.0
TkA06G145470PF01535PPR901171.7e-37125.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M2Y7Arabidopsis thalianasp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g4971048.200%Swiss-ProtMedium
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic41.000%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic41.300%Swiss-ProtMedium
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333041.400%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic41.300%Swiss-ProtMedium

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