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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G145190
Reference: TK1151 Chr: Chr06 Coordinates: 38051339-38052193 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

855 bp · TkA06G145190|TK1151|cDNA

ATGAAGAAACAATCTCTCGCTAGCTTCAACGAAGTCATTCAAGAAGACGAAAGGTATGTAAAAATCGCAATGGAAATTGAAGGGCTTGTTCATATTCTAATGAAGTTTTTGAATTCAAAAGACATTGAAATTCAAGAAGAGGCATTAAAATCGGTGGCTACGATTTGTGGGTTTGATTCATACAAGACTGTTCTCGAAGGAACCGGTATCATTTCTTCATTAATCAGAGTCCTGGAGAGTGGAAGCGATTTGGGTAAAGA...

CDS

Download CDS FASTA

855 bp · TkA06G145190|TK1151|CDS

ATGAAGAAACAATCTCTCGCTAGCTTCAACGAAGTCATTCAAGAAGACGAAAGGTATGTAAAAATCGCAATGGAAATTGAAGGGCTTGTTCATATTCTAATGAAGTTTTTGAATTCAAAAGACATTGAAATTCAAGAAGAGGCATTAAAATCGGTGGCTACGATTTGTGGGTTTGATTCATACAAGACTGTTCTCGAAGGAACCGGTATCATTTCTTCATTAATCAGAGTCCTGGAGAGTGGAAGCGATTTGGGTAAAGA...

Protein

Download Protein FASTA

284 aa · TkA06G145190|TK1151|PROTEIN

MKKQSLASFNEVIQEDERYVKIAMEIEGLVHILMKFLNSKDIEIQEEALKSVATICGFDSYKTVLEGTGIISSLIRVLESGSDLGKELSTRCLMKVTANSDNAWSVSAHGGASALLKICGSGCDDAAGGELVGLACGVLKNLIGVEEIKRFVVDEGAIPMSIKLVKSKNESSQISAIEFIQVLASANEFMRGMIVNEGGIRVLVRVIDPKSSYSSKPCEKSMKALITLCSDSIGYINSLMYFGNLVNASSKFIVEICFFI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G145190
TK1151 IDTkA06G145190
OH-1004 IDLXL04_024425
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G145190
LocationChr06:38051339-38052193 (-)
DescriptionSimilar to PUB4: U-box domain-containing protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024425 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0034614 cellular response to reactive oxygen species Biological Process
GO:0048364 root development Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:1904821 chloroplast disassembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G23140
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.578
Rank 1 · TkA06G145190 · TK1151
Cytoplasm0.328
Rank 2 · TkA06G145190 · TK1151
Cell membrane0.070
Rank 3 · TkA06G145190 · TK1151
Endoplasmic reticulum0.043
Rank 4 · TkA06G145190 · TK1151
Mitochondrion0.037
Rank 5 · TkA06G145190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24768ARM_ARMC53-118 aa
PF03224V-ATPase_H_N3-177 aa
PF25767ARM_TBCD_2nd10-58 aa
PF11698V-ATPase_H_C12-55 aa
PF25598ARM_PUB17-96 aa
PF00514Arm28-53 aa
PF02985HEAT29-56 aa
PF30701ARMC640-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G145190PF24768ARM_ARMC531188.8e-1245.7
TkA06G145190PF03224V-ATPase_H_N31770.002917.8
TkA06G145190PF25767ARM_TBCD_2nd10580.2211.6
TkA06G145190PF11698V-ATPase_H_C12550.03215.1
TkA06G145190PF25598ARM_PUB17962e-0731.5
TkA06G145190PF00514Arm28533.2e-1040.4
TkA06G145190PF02985HEAT29560.212.7
TkA06G145190PF30701ARMC640800.007715.6
TkA06G145190PF04078Rcd163990.003917.3
TkA06G145190PF00514Arm69883.2e-1040.4
TkA06G145190PF11698V-ATPase_H_C731020.03215.1
TkA06G145190PF25598ARM_PUB972312e-0731.5
TkA06G145190PF24768ARM_ARMC5992318.8e-1245.7
TkA06G145190PF30701ARMC61052070.007715.6
TkA06G145190PF00514Arm1351423.2e-1040.4
TkA06G145190PF04078Rcd11381830.003917.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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