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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G141500
Reference: TK1151 Chr: Chr06 Coordinates: 37087880-37091224 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

899 bp · TkA06G141500|TK1151|cDNA

CACACACACACTTACATATACATACACAGCCACGTTAGCATCACGAAACCCTAGCTAAAAGAGCAAAAAAGAACATAATTAAGGGGAAAATGGGAAGAGGAAAGATTGCAATCAGGAGAATAGACAACTCCACCAGTAGGCAGGTGACATTTTCAAAGAGAAGAAATGGGTTACTGAAGAAAGCAAAAGAGTTGGCCATTTTATGTGATGCGGAAGTTGGAGTCATGATCTTCTCCAGTACCAATAAGCTCTATGAATTC...

CDS

Download CDS FASTA

651 bp · TkA06G141500|TK1151|CDS

ATGGGAAGAGGAAAGATTGCAATCAGGAGAATAGACAACTCCACCAGTAGGCAGGTGACATTTTCAAAGAGAAGAAATGGGTTACTGAAGAAAGCAAAAGAGTTGGCCATTTTATGTGATGCGGAAGTTGGAGTCATGATCTTCTCCAGTACCAATAAGCTCTATGAATTCTCAAGTGCAAGCATGAAATCAGTGATTCAACACTACAATAAATCAAAAGAAGAAAACAGTCAGCTGGTGAATCCGATGTCAAACGTCAA...

Protein

Download Protein FASTA

216 aa · TkA06G141500|TK1151|PROTEIN

MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTNKLYEFSSASMKSVIQHYNKSKEENSQLVNPMSNVKLWQMEAAMLKQQLQNLHETHRQLMGEELCGLGVEDLQKLENQLAVSLQGIRIKKEEVLTNEIRELNRKGSQIHQENVQLYKKIHEAKAYAASYDEISNSLHETPVSIEHITLPIRSYANLNIGGLLTYQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G141500
TK1151 IDTkA06G141500
OH-1004 IDLXL04_024457
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)95.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G141500
LocationChr06:37087880-37091224 (+)
DescriptionSimilar to MADS27: MADS-box transcription factor 27
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g57230 Probable transcription factor involved in the regulation of flowering time in long-day photoperiod.
MicroRNA-mediated regulation of stomatal development in Arabidopsis.2007 · DOI: 10.1105/tpc.107.050377
miR824-Regulated AGAMOUS-LIKE16 Contributes to Flowering Time Repression in Arabidopsis.2014 · DOI: 10.1105/tpc.114.124685
At4g37940 Probable transcription factor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0579600 Probable transcription factor. No verified direct reference in this release
Os02g0731200 Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14.
The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.2013 · DOI: 10.1038/ncomms2542
Os08g0431900 Probable transcription factor. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024457 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0009908 flower development Biological Process
GO:0010440 stomatal lineage progression Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0048578 positive regulation of long-day photoperiodism, flowering Biological Process
GO:0048586 regulation of long-day photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT2G22630
ath:AT3G57230
ath:AT4G37940
dosa:Os02g0579600
dosa:Os02g0731200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.944
Rank 1 · TkA06G141500 · TK1151
Cytoplasm0.130
Rank 2 · TkA06G141500 · TK1151
Cell membrane0.027
Rank 3 · TkA06G141500 · TK1151
Endoplasmic reticulum0.015
Rank 4 · TkA06G141500 · TK1151
Plastid0.011
Rank 5 · TkA06G141500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00319SRF-TF10-57 aa
PF10046BLOC1_250-110 aa
PF14661HAUS6_N52-166 aa
PF05103DivIVA62-102 aa
PF01166TSC2266-92 aa
PF12325TMF_TATA_bd71-130 aa
PF01041DegT_DnrJ_EryC172-202 aa
PF06005ZapB72-79 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G141500PF00319SRF-TF10572.1e-2588.6
TkA06G141500PF10046BLOC1_2501109.97.3
TkA06G141500PF14661HAUS6_N521660.5810.4
TkA06G141500PF05103DivIVA621020.04814.3
TkA06G141500PF01166TSC2266920.3311.9
TkA06G141500PF12325TMF_TATA_bd711300.005617.5
TkA06G141500PF01041DegT_DnrJ_EryC1722020.1811.7
TkA06G141500PF06005ZapB72791.410.2
TkA06G141500PF01813ATP-synt_D79960.02815.0
TkA06G141500PF07544Med9841100.113.4
TkA06G141500PF01486K-box851703.7e-2485.4
TkA06G141500PF06005ZapB851301.410.2
TkA06G141500PF24245INO80F901002.29.1
TkA06G141500PF01166TSC22951130.3311.9
TkA06G141500PF17675APG6_N1001802.09.6
TkA06G141500PF01813ATP-synt_D1231950.02815.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A2RVQ5Arabidopsis thalianasp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL1668.900%Swiss-ProtHigh
Q9SZJ6Arabidopsis thalianasp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL2169.000%Swiss-ProtHigh
Q6EP49Oryza sativa subsp. japonicasp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 2771.800%Swiss-ProtHigh
Q6Z6W2Oryza sativa subsp. japonicasp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 5766.300%Swiss-ProtHigh
Q6VAM4Oryza sativa subsp. japonicasp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 2363.200%Swiss-ProtHigh

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