TkA06G138750 | RubberDandelionOmics

Gene overview

TkA06G138750

Reference: TK1151 Chr: Chr06 Coordinates: 36344248-36346156 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1459 bp · TkA06G138750|TK1151|cDNA

GAAACGGCGGAGGGGAGGCCAAATGTGGAAAGATGGACCGCTTACCGTCACGAGGTAAAGAAGATCAGTCTAATCGCGGTGCCCATGGTGGTGGTTGCGGCGTTGCAGTACCTGATGCAAATGGCGGCGGTGGTAATGGTGGGACACATTGATCAACTATCTCTCTCTAGCCTCGCCATTGCCACCTCTCTAACAAATGTCACCGGTTTCAGTCTTCTTTCAGGACTTGTTGGAGGATTAGAGACCCTTTGTGGGCAAGC...

CDS

Download CDS FASTA

1335 bp · TkA06G138750|TK1151|CDS

ATGGTGGTGGTTGCGGCGTTGCAGTACCTGATGCAAATGGCGGCGGTGGTAATGGTGGGACACATTGATCAACTATCTCTCTCTAGCCTCGCCATTGCCACCTCTCTAACAAATGTCACCGGTTTCAGTCTTCTTTCAGGACTTGTTGGAGGATTAGAGACCCTTTGTGGGCAAGCTTATGGAGCCAAACAACATAACAAAATTGGAGTCTACACTTGCAGTGCCATAATCTCATTGCTATTAGTCTGCATACCGATCTC...

Protein

Download Protein FASTA

444 aa · TkA06G138750|TK1151|PROTEIN

MVVVAALQYLMQMAAVVMVGHIDQLSLSSLAIATSLTNVTGFSLLSGLVGGLETLCGQAYGAKQHNKIGVYTCSAIISLLLVCIPISFCWIFLDKFLILIHQDPQISHEARKYSLYLIPALFFGAIVKPLVRSLQSQSLTLPLLVSAALVLCFHVPLCWVLVFKLKMGGPGAAVAFSVSNLFYLILIVFYVRFSSTCENTRVTFSMDAVRGIKEFFRFAVPSAVMICLKWWSLEVLVLLSGVLPNPTLETSVLSICLTIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G138750`
TK1151 ID	TkA06G138750
OH-1004 ID	LXL04_024488
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	97.500
Protein coverage (%)	TK1151 81.532 / OH-1004 37.708 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G138750

Location Chr06:36344248-36346156 (-)

Description Similar to DTX14: Protein DETOXIFICATION 14

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71140`	Protein DETOXIFICATION 14.	No verified direct reference in this release
`At1g15170`	Protein DETOXIFICATION 12.	No verified direct reference in this release
`At2g04080`	Protein DETOXIFICATION 2.	No verified direct reference in this release
`At2g04040`	Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds.	Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification.2002 · DOI: 10.1074/jbc.m108777200
`At1g15180`	Protein DETOXIFICATION 13.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024488 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015691 cadmium ion transport Biological Process

GO:0042908 xenobiotic transport Biological Process

GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0015297 antiporter activity Molecular Function

GO:0015562 efflux transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

GO:0042910 xenobiotic transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G71140

ath:AT2G04040

ath:AT2G04080

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.579

Rank 1 · TkA06G138750 · TK1151

Lysosome / Vacuole0.190

Rank 2 · TkA06G138750 · TK1151

Endoplasmic reticulum0.103

Rank 3 · TkA06G138750 · TK1151

Cytoplasm0.072

Rank 4 · TkA06G138750 · TK1151

Golgi apparatus0.051

Rank 5 · TkA06G138750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01554MatE2-160 aa

PF01554MatE173-188 aa

PF01554MatE221-382 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G138750	`PF01554`	MatE	2	160	1.6e-56	191.2
TkA06G138750	`PF01554`	MatE	173	188	1.6e-56	191.2
TkA06G138750	`PF01554`	MatE	221	382	1.6e-56	191.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C994`	Arabidopsis thaliana	sp\|Q9C994\|DTX14_ARATH Protein DETOXIFICATION 14	55.200%	Swiss-Prot	High
`Q8L731`	Arabidopsis thaliana	sp\|Q8L731\|DTX12_ARATH Protein DETOXIFICATION 12	52.000%	Swiss-Prot	High
`Q8GXM8`	Arabidopsis thaliana	sp\|Q8GXM8\|DTX2_ARATH Protein DETOXIFICATION 2	52.400%	Swiss-Prot	High
`Q9SIA5`	Arabidopsis thaliana	sp\|Q9SIA5\|DTX1_ARATH Protein DETOXIFICATION 1	53.400%	Swiss-Prot	High
`Q94AL1`	Arabidopsis thaliana	sp\|Q94AL1\|DTX13_ARATH Protein DETOXIFICATION 13	50.700%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card