RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G127760
Reference: TK1151 Chr: Chr06 Coordinates: 33384214-33385958 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1289 bp · TkA06G127760|TK1151|cDNA

AAACAGATGACTTGCCAACACCAACTCTACCTTCCCTCGTCTACTTAATACCCCTATCTCCCTTCTCCCATTTTCACTCCATTCGTATCGCCTTTTCCACTCCTGTCTCCAAAAATGGTGAACTTAGTAGCCATACAGCAGCCACTGATTATCAGATTGATGAAAATGGCCGGAGTCCAAACTCACGCCGTCGAAATCGAGCCCGGAACCATCATGAACTTCTGGGTACCAAATGAAACCATTCAAAAACCCAACAAAAA...

CDS

Download CDS FASTA

903 bp · TkA06G127760|TK1151|CDS

ATGGTGAACTTAGTAGCCATACAGCAGCCACTGATTATCAGATTGATGAAAATGGCCGGAGTCCAAACTCACGCCGTCGAAATCGAGCCCGGAACCATCATGAACTTCTGGGTACCAAATGAAACCATTCAAAAACCCAACAAAAAATCCAAAACCACCGTCGTCACCACAATCGCTCCCAAACCGGAGAAGCCGGTGGTCGTGTTAGTTCATGGTTTCGCTGCGGAGGGCATAGCGACGTGGCAGTTCCAAATTGGCGC...

Protein

Download Protein FASTA

300 aa · TkA06G127760|TK1151|PROTEIN

MVNLVAIQQPLIIRLMKMAGVQTHAVEIEPGTIMNFWVPNETIQKPNKKSKTTVVTTIAPKPEKPVVVLVHGFAAEGIATWQFQIGALSKQYSVYVPDLLFFGGSISDNPDRSPTFQAKCLVRGLRKLGVERCVVVGFSYGGMVAFKMAELYPDMIRAMVVSGSILAMTDSISELTLKSLGFSSSAELLLPDSVRGLKALLSVATHRKLWFPDRLHKDYLEVMFNNRKERGELLEGLVVSNKDVTIPYFPQRIHLLWGEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G127760
TK1151 IDTkA06G127760
OH-1004 IDLXL04_024586
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.000
Protein coverage (%)TK1151 99.000 / OH-1004 74.436
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G127760
LocationChr06:33384214-33385958 (-)
DescriptionSimilar to ephx3: Epoxide hydrolase 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024586 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006629 lipid metabolic process Biological Process
GO:0097176 epoxide metabolic process Biological Process
GO:0016020 membrane Cellular Component
GO:0043231 intracellular membrane-bounded organelle Cellular Component
GO:0004301 epoxide hydrolase activity Molecular Function
GO:0016787 hydrolase activity Molecular Function
KEGG gene cross-reference
cel:CELE_K02F3.6
hsa:253152
hsa:79852
mmu:384214
xtr:779884
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.292
Rank 1 · TkA06G127760 · TK1151
Plastid0.168
Rank 2 · TkA06G127760 · TK1151
Lysosome / Vacuole0.136
Rank 3 · TkA06G127760 · TK1151
Cytoplasm0.125
Rank 4 · TkA06G127760 · TK1151
Cell membrane0.120
Rank 5 · TkA06G127760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02230Abhydrolase_260-84 aa
PF00756Esterase62-100 aa
PF12146Hydrolase_463-296 aa
PF00561Abhydrolase_165-297 aa
PF12697Abhydrolase_667-297 aa
PF01738DLH125-160 aa
PF02230Abhydrolase_2129-173 aa
PF12695Abhydrolase_5129-200 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G127760PF02230Abhydrolase_260840.000222.0
TkA06G127760PF00756Esterase621000.01415.9
TkA06G127760PF12146Hydrolase_4632967.1e-0832.8
TkA06G127760PF00561Abhydrolase_1652972e-2487.3
TkA06G127760PF12697Abhydrolase_6672975.2e-1660.6
TkA06G127760PF01738DLH1251600.003417.7
TkA06G127760PF02230Abhydrolase_21291730.000222.0
TkA06G127760PF12695Abhydrolase_51292000.006117.1
TkA06G127760PF07819PGAP11301660.01515.8
TkA06G127760PF05577Peptidase_S281311710.003117.1
TkA06G127760PF00756Esterase1312070.01415.9
TkA06G127760PF00326Peptidase_S91311740.02614.7
TkA06G127760PF08840BAAT_C1331700.09313.5
TkA06G127760PF00975Thioesterase1351520.1313.2
TkA06G127760PF02230Abhydrolase_22532740.000222.0
TkA06G127760PF01738DLH2532810.003417.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser