Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1725 bp · TkA06G127330|TK1151|cDNA
GACGTTCTCGGTCTCTTCTTCCACGCACGTGATATTCATCTCCTTCGCAATATCCTACAAAAAAACACCAGTACCAGCAACCGAGATCACTACCATCTTTTCTTTCCTATGAATACTACCACCACCACCAACCTCCACCATCCGCCGCCCATCAACATCGCCGTATCCCCAGCTCCCAACTTTACAGCTTACCCCATCATGGGTGCAGAAGAACCCATACCCCAACCCCCATCATCGCAATCGCCCCCTCTTTCCCAACA...
1347 bp · TkA06G127330|TK1151|CDS
GACGTTCTCGGTCTCTTCTTCCACGCACGTGATATTCATCTCCTTCGCAATATCCTACAAAAAAACACCAGTACCAGCAACCGAGATCACTACCATCTTTTCTTTCCTATGAATACTACCACCACCACCAACCTCCACCATCCGCCGCCCATCAACATCGCCGTATCCCCAGCTCCCAACTTTACAGCTTACCCCATCATGGGTGCAGAAGAACCCATACCCCAACCCCCATCATCGCAATCGCCCCCTCTTTCCCAACA...
Protein
Download Protein FASTA448 aa · TkA06G127330|TK1151|PROTEIN
DVLGLFFHARDIHLLRNILQKNTSTSNRDHYHLFFPMNTTTTTNLHHPPPINIAVSPAPNFTAYPIMGAEEPIPQPPSSQSPPLSQQSPSPPLPTADESSSNSDLSQIPSTNPSKIPIRPQKIRKLSSFASTDSQTTLPEEIKPQTTIAEADASKTIILPTTTSTVVTKNRRRNPSHSAKDLPKIIKPLSAPGEITAALQHLRSSDPLLANLIDNHPPPTFDTHQAPFLALSKSILYQQLAYKAGTSIYTRFVTLCGGES...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G127330 |
|---|---|
| TK1151 ID | TkA06G127330 |
| OH-1004 ID | LXL04_024588 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 97.600 |
| Protein coverage (%) | TK1151 91.964 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G127330 |
|---|---|
| Location | Chr06:33306701-33308862 (-) |
| Description | Similar to mag1: DNA-3-methyladenine glycosylase 1 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006285 base-excision repair, AP site formation Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0006307 DNA alkylation repair Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003677 DNA binding Molecular Function GO:0003684 damaged DNA binding Molecular Function GO:0003824 catalytic activity Molecular Function GO:0003905 alkylbase DNA N-glycosylase activity Molecular Function GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity Molecular Function GO:0008725 DNA-3-methyladenine glycosylase activity Molecular Function GO:0032131 alkylated DNA binding Molecular Function |
| KEGG gene cross-reference | bsu:BSU01800 bsu:BSU08010 sce:YER142C spo:2540646 spo:2543565 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00730HhH-GPD233-376 aaPF09597SAM_Ribosomal_mS41265-298 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G127330 | PF00730 | HhH-GPD | 233 | 376 | 3.1e-17 | 63.6 |
| TkA06G127330 | PF09597 | SAM_Ribosomal_mS41 | 265 | 298 | 0.27 | 12.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.