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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G125180
Reference: TK1151 Chr: Chr06 Coordinates: 32573383-32574971 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1392 bp · TkA06G125180|TK1151|cDNA

ATGGCGGCGACTCGTCGTGAAATTTTCCCGGTGACGCCGACGCTGTTGTCGCTGGTGGCGGCTTATGCCCCACAGTACACCCATGTCTTGCTCTTTCTTGTCTCAACGTTTAACCTCTCCCCTGAACTCCTATACAATATCTTCGCCGCCGTCCGACGCTACTGGAAACCTATTCCTAAATCCACAAAACTCACTCTCGTCTTTAAAGAGAAAGACGGCCTGGTCTCAAACCAGATGTTCCACGCCGCCGAAGCTTTCCT...

CDS

Download CDS FASTA

1392 bp · TkA06G125180|TK1151|CDS

ATGGCGGCGACTCGTCGTGAAATTTTCCCGGTGACGCCGACGCTGTTGTCGCTGGTGGCGGCTTATGCCCCACAGTACACCCATGTCTTGCTCTTTCTTGTCTCAACGTTTAACCTCTCCCCTGAACTCCTATACAATATCTTCGCCGCCGTCCGACGCTACTGGAAACCTATTCCTAAATCCACAAAACTCACTCTCGTCTTTAAAGAGAAAGACGGCCTGGTCTCAAACCAGATGTTCCACGCCGCCGAAGCTTTCCT...

Protein

Download Protein FASTA

463 aa · TkA06G125180|TK1151|PROTEIN

MAATRREIFPVTPTLLSLVAAYAPQYTHVLLFLVSTFNLSPELLYNIFAAVRRYWKPIPKSTKLTLVFKEKDGLVSNQMFHAAEAFLGTKVNPNSNRLRITKSVKEDSINVKFAKSEAIVDSFEGMSLAWRYVILEGKQKGPRVAGVKPEKKYIELVFEKEHKETVIKSYLPWILEKSKELEAQKKVVKLHNLQWPCTKKESVNLDHPSTFDTLALEPEMKKTITDDLDLFLRRRDFYKKVGKVWKRGYLLYGPPGTGKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G125180
TK1151 IDTkA06G125180
OH-1004 IDLXL04_024609
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.100
Protein coverage (%)TK1151 100.000 / OH-1004 39.170
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G125180
LocationChr06:32573383-32574971 (+)
DescriptionSimilar to At2g18190: AAA-ATPase At2g18190
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g17730 AAA-ATPase At5g17730. No verified direct reference in this release
At5g17760 AAA-ATPase At5g17760. No verified direct reference in this release
At2g18193 AAA-ATPase At2g18193. No verified direct reference in this release
At3g50940 AAA-ATPase At3g50940. No verified direct reference in this release
At2g18190 AAA-ATPase At2g18190. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024609 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006950 response to stress Biological Process
GO:0009651 response to salt stress Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT2G18190
ath:AT2G18193
ath:AT5G17760
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.375
Rank 1 · TkA06G125180 · TK1151
Nucleus0.231
Rank 2 · TkA06G125180 · TK1151
Mitochondrion0.152
Rank 3 · TkA06G125180 · TK1151
Endoplasmic reticulum0.117
Rank 4 · TkA06G125180 · TK1151
Plastid0.095
Rank 5 · TkA06G125180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14363AAA_assoc52-133 aa
PF20030bpMoxR244-277 aa
PF13555AAA_29245-270 aa
PF13191AAA_16246-273 aa
PF12775AAA_7247-290 aa
PF00004AAA249-376 aa
PF05673DUF815249-306 aa
PF13479AAA_24249-274 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G125180PF14363AAA_assoc521333.3e-1660.2
TkA06G125180PF20030bpMoxR2442770.02314.5
TkA06G125180PF13555AAA_292452700.002918.1
TkA06G125180PF13191AAA_162462730.0006521.0
TkA06G125180PF12775AAA_72472900.08713.1
TkA06G125180PF00004AAA2493761.1e-2178.3
TkA06G125180PF05673DUF8152493060.004916.8
TkA06G125180PF13479AAA_242492740.00517.3
TkA06G125180PF05496RuvB_N2493070.02315.2
TkA06G125180PF13401AAA_222492790.1113.6
TkA06G125180PF24883NPHP3_N2492710.1413.1
TkA06G125180PF00910RNA_helicase2503120.001120.1
TkA06G125180PF07728AAA_52502810.002718.4
TkA06G125180PF20720nSTAND32503150.006916.8
TkA06G125180PF13086AAA_112502710.02814.9
TkA06G125180PF13521AAA_282502710.02915.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FN78Arabidopsis thalianasp|Q9FN78|AATPF_ARATH AAA-ATPase At5g1773046.500%Swiss-ProtMedium
Q9FN75Arabidopsis thalianasp|Q9FN75|AATPI_ARATH AAA-ATPase At5g1776046.300%Swiss-ProtMedium
Q8GW96Arabidopsis thalianasp|Q8GW96|AATP3_ARATH AAA-ATPase At2g1819347.200%Swiss-ProtMedium
Q147F9Arabidopsis thalianasp|Q147F9|AATPC_ARATH AAA-ATPase At3g5094050.100%Swiss-ProtHigh
F4IQG2Arabidopsis thalianasp|F4IQG2|AATP2_ARATH AAA-ATPase At2g1819047.900%Swiss-ProtMedium

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