TkA06G123270 | RubberDandelionOmics

Gene overview

TkA06G123270

Reference: TK1151 Chr: Chr06 Coordinates: 32109414-32113894 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2660 bp · TkA06G123270|TK1151|cDNA

TGTATCGAAAGCCATTATAATGCGTATACACCTATACATACACACTGTACTACACTATATCTATATATACACACACTTACTCTCACTCTAGATCTCAGTGTCAATGCTGTCTTGTCCAGTAAAATACGCCCCTTTCTTCGTCTTCCCCCAAACACACAAACACTTTCTCTTCGTAAATTGAGATTTTTCCTTTCGAAAAACATGGAAACCAAATGGGTTTTGTTCTTCTTCATAATAACTCAACTGGGTTGTCAGGTAAT...

CDS

Download CDS FASTA

2379 bp · TkA06G123270|TK1151|CDS

TGTATCGAAAGCCATTATAATGCGTATACACCTATACATACACACTGTACTACACTATATCTATATATACACACACTTACTCTCACTCTAGATCTCAGTGTCAATGCTGTCTTGTCCAGTAAAATACGCCCCTTTCTTCGTCTTCCCCCAAACACACAAACACTTTCTCTTCGTAAATTGAGATTTTTCCTTTCGAAAAACATGGAAACCAAATGGGTTTTGTTCTTCTTCATAATAACTCAACTGGGTTGTCAGGTAAT...

Protein

Download Protein FASTA

792 aa · TkA06G123270|TK1151|PROTEIN

CIESHYNAYTPIHTHCTTLYLYIHTLTLTLDLSVNAVLSSKIRPFLRLPPNTQTLSLRKLRFFLSKNMETKWVLFFFIITQLGCQVIECTVTYDSKAIVINGERRILISGSIHYTRSTPEMWEDLVMKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFLKTVQKAGMYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKNAMKGFTVKIVNLMKSEKMFESQGGPIILSQVENEYGSVGKAYGGAGH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G123270`
TK1151 ID	TkA06G123270
OH-1004 ID	LXL04_024628
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.400
Protein coverage (%)	TK1151 95.328 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G123270

Location Chr06:32109414-32113894 (-)

Description Similar to BGAL3: Beta-galactosidase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36360`	Beta-galactosidase 3.	No verified direct reference in this release
`At1g45130`	Beta-galactosidase 5.	No verified direct reference in this release
`At3g13750`	Beta-galactosidase 1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0165400`	Beta-galactosidase 5.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024628 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009827 plant-type cell wall modification Biological Process

GO:0019388 galactose catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G45130

ath:AT3G13750

ath:AT4G36360

dosa:Os03g0165400

sly:544167

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.372

Rank 1 · TkA06G123270 · TK1151

Extracellular0.243

Rank 2 · TkA06G123270 · TK1151

Endoplasmic reticulum0.145

Rank 3 · TkA06G123270 · TK1151

Cytoplasm0.145

Rank 4 · TkA06G123270 · TK1151

Cell membrane0.126

Rank 5 · TkA06G123270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01301Glyco_hydro_3598-402 aa

PF02449Glyco_hydro_42119-197 aa

PF17834GHD425-480 aa

PF13364BetaGal_ABD2531-610 aa

PF21467BetaGal_gal-bd533-589 aa

PF13364BetaGal_ABD2668-721 aa

PF21467BetaGal_gal-bd682-767 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G123270	`PF01301`	Glyco_hydro_35	98	402	1.4e-122	410.0
TkA06G123270	`PF02449`	Glyco_hydro_42	119	197	1.3e-05	25.4
TkA06G123270	`PF17834`	GHD	425	480	5.9e-23	81.1
TkA06G123270	`PF13364`	BetaGal_ABD2	531	610	7e-07	30.7
TkA06G123270	`PF21467`	BetaGal_gal-bd	533	589	6.6e-35	119.8
TkA06G123270	`PF13364`	BetaGal_ABD2	668	721	7e-07	30.7
TkA06G123270	`PF21467`	BetaGal_gal-bd	682	767	6.6e-35	119.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SCV9`	Arabidopsis thaliana	sp\|Q9SCV9\|BGAL3_ARATH Beta-galactosidase 3	73.800%	Swiss-Prot	High
`Q9MAJ7`	Arabidopsis thaliana	sp\|Q9MAJ7\|BGAL5_ARATH Beta-galactosidase 5	69.200%	Swiss-Prot	High
`Q9SCW1`	Arabidopsis thaliana	sp\|Q9SCW1\|BGAL1_ARATH Beta-galactosidase 1	65.000%	Swiss-Prot	High
`Q10RB4`	Oryza sativa subsp. japonica	sp\|Q10RB4\|BGAL5_ORYSJ Beta-galactosidase 5	69.500%	Swiss-Prot	High

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