TkA06G123210 | RubberDandelionOmics

Gene overview

TkA06G123210

Reference: TK1151 Chr: Chr06 Coordinates: 32082572-32092918 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1443 bp · TkA06G123210|TK1151|cDNA

GCAGATGGTGCCGGAGATTGCATGGGGAAAGCATACCCGAGTAATACTGGATGTGGGATGCGGAGTAGCAAGTTTTGGAGGTTACTTGTTCGACAAAGACGTACTTACAATGTCATTTGCACCAAAAGATGAACACGAAGCTCAAATTCAGTTTGCTCTAGAGAGAGGAATACCAGCAATTTCGGCTGCCATGGGCACCCAACGCCTTCCATTCCCAAGCAATGCTTTCGATCTTGTCCATTGTGCTCGTTGTAGAGTAC...

CDS

Download CDS FASTA

2607 bp · TkA06G123210|TK1151|CDS

ATGGCCGTCGGAAAATCTCGTGGTAATAAGAGATCGTACGGTGGTTCTTGTTCAGTAACAGCCACCATGCTTGTGTTCGTGTTTGTATGCGTTTTTGGTGTATGGATGTTGACCTCCACTTCCCTTGTTTCACCCCGAAAGAAGTCTCCCGTACAGAAGGCAGCTTCATCTCTTCATTCCGTTTTCCAAAACGCTCATCGGAAGAAAAATCTACCACGAAAGATCCCTGCTACTGTTTTCGAAGATAATCCAGGTGATCT...

Protein

Download Protein FASTA

868 aa · TkA06G123210|TK1151|PROTEIN

MAVGKSRGNKRSYGGSCSVTATMLVFVFVCVFGVWMLTSTSLVSPRKKSPVQKAASSLHSVFQNAHRKKNLPRKIPATVFEDNPGDLPSDAIKTDDDLMDQSRGASTENDQREIIKNVVDDVETVNENDVRKQDQAKQVQEINQHGMEEKTSGKKEKKQETDQDTQNTMSFKQHTEKMITDHKNIEKEEDQQKERIGDEESNMKKQRNEQKVANDQGGEKSNMKNDQQRHATDDEHEESLETSDDTQMESHSIATETQSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G123210`
TK1151 ID	TkA06G123210
OH-1004 ID	LXL04_024630
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G123210

Location Chr06:32082572-32092918 (-)

Description Similar to At3g51070: Probable methyltransferase PMT27

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51070`	Probable methyltransferase PMT27.	No verified direct reference in this release
`At1g29470`	Probable methyltransferase PMT24.	No verified direct reference in this release
`At5g64030`	Probable methyltransferase PMT26.	No verified direct reference in this release
`At2g34300`	Probable methyltransferase PMT25.	No verified direct reference in this release
`At2g40280`	Probable methyltransferase PMT23.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024630 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0032259 methylation Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

KEGG gene cross-reference

ath:AT1G29470

ath:AT2G34300

ath:AT2G40280

ath:AT3G51070

ath:AT5G64030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.799

Rank 1 · TkA06G123210 · TK1151

Endoplasmic reticulum0.085

Rank 2 · TkA06G123210 · TK1151

Cell membrane0.080

Rank 3 · TkA06G123210 · TK1151

Extracellular0.072

Rank 4 · TkA06G123210 · TK1151

Cytoplasm0.049

Rank 5 · TkA06G123210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26403DUF810182-139 aa

PF03141Methyltransf_29107-229 aa

PF03141Methyltransf_29350-856 aa

PF13649Methyltransf_25468-560 aa

PF08241Methyltransf_11469-563 aa

PF08242Methyltransf_12469-562 aa

PF13649Methyltransf_25773-815 aa

PF08242Methyltransf_12776-817 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G123210	`PF26403`	DUF8101	82	139	0.023	16.0
TkA06G123210	`PF03141`	Methyltransf_29	107	229	3.2e-231	769.0
TkA06G123210	`PF03141`	Methyltransf_29	350	856	3.2e-231	769.0
TkA06G123210	`PF13649`	Methyltransf_25	468	560	3.6e-08	34.7
TkA06G123210	`PF08241`	Methyltransf_11	469	563	5e-11	43.8
TkA06G123210	`PF08242`	Methyltransf_12	469	562	0.015	16.8
TkA06G123210	`PF13649`	Methyltransf_25	773	815	3.6e-08	34.7
TkA06G123210	`PF08242`	Methyltransf_12	776	817	0.015	16.8
TkA06G123210	`PF08241`	Methyltransf_11	801	819	5e-11	43.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SD39`	Arabidopsis thaliana	sp\|Q9SD39\|PMTR_ARATH Probable methyltransferase PMT27	75.800%	Swiss-Prot	Medium
`Q6NPR7`	Arabidopsis thaliana	sp\|Q6NPR7\|PMTO_ARATH Probable methyltransferase PMT24	68.100%	Swiss-Prot	Medium
`Q8L7V3`	Arabidopsis thaliana	sp\|Q8L7V3\|PMTQ_ARATH Probable methyltransferase PMT26	65.800%	Swiss-Prot	Medium
`Q0WT31`	Arabidopsis thaliana	sp\|Q0WT31\|PMTP_ARATH Probable methyltransferase PMT25	66.500%	Swiss-Prot	Medium
`Q9SIZ3`	Arabidopsis thaliana	sp\|Q9SIZ3\|PMTN_ARATH Probable methyltransferase PMT23	56.200%	Swiss-Prot	Medium

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