TkA06G119330 | RubberDandelionOmics

Gene overview

TkA06G119330

Reference: TK1151 Chr: Chr06 Coordinates: 31169275-31170402 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1092 bp · TkA06G119330|TK1151|cDNA

ATGAGAGTCGATGATGACAGACTCAGTGCCCTACCGGAGTCCTTGCAACTTCACATTCTCACATTCCTTGACGCAAAACAAGCAGTTCAAGCCTCCACTTTATCAAAAAGCTGGGATATTATGTGGACTCGACTCCCGGTTCTGAAACTCATCTCCTACGCTTTCAACAATATCCGTTTGTTCGATAAATTCGTCTACAATGCTCTTCGTCGGCGTGATCGTTCATCAAAGCTGGAAAAATTAAGATTTCATCGCTCCAA...

CDS

Download CDS FASTA

1092 bp · TkA06G119330|TK1151|CDS

ATGAGAGTCGATGATGACAGACTCAGTGCCCTACCGGAGTCCTTGCAACTTCACATTCTCACATTCCTTGACGCAAAACAAGCAGTTCAAGCCTCCACTTTATCAAAAAGCTGGGATATTATGTGGACTCGACTCCCGGTTCTGAAACTCATCTCCTACGCTTTCAACAATATCCGTTTGTTCGATAAATTCGTCTACAATGCTCTTCGTCGGCGTGATCGTTCATCAAAGCTGGAAAAATTAAGATTTCATCGCTCCAA...

Protein

Download Protein FASTA

363 aa · TkA06G119330|TK1151|PROTEIN

MRVDDDRLSALPESLQLHILTFLDAKQAVQASTLSKSWDIMWTRLPVLKLISYAFNNIRLFDKFVYNALRRRDRSSKLEKLRFHRSKICSAKLLKSVFDYASMFDVEQLEVYVQHSRNQTWPICPLTSFDSLKSLKLESQSDMSCPFIGSSSTSSFKNLTALHLKRVIITDHDRFTEFPVLESLTLINCHLCETKPLSIQALRLTDLTISTLESINCCELTTPKLKLFDYRGANFPLLRIHEGVPDLETAVIGFHGYCNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G119330`
TK1151 ID	TkA06G119330
OH-1004 ID	LXL04_024663
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.500
Protein coverage (%)	TK1151 100.000 / OH-1004 94.937 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G119330`
Location	Chr06:31169275-31170402 (+)
Description	Similar to At4g03220: Putative F-box/FBD/LRR-repeat protein At4g03220
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024663` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0010588 cotyledon vascular tissue pattern formation Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference	ath:AT2G04230 ath:AT3G18150 ath:AT3G26922 ath:AT4G03220 ath:AT5G22720 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.857

Rank 1 · TkA06G119330 · TK1151

Cytoplasm0.193

Rank 2 · TkA06G119330 · TK1151

Cell membrane0.035

Rank 3 · TkA06G119330 · TK1151

Endoplasmic reticulum0.033

Rank 4 · TkA06G119330 · TK1151

Plastid0.016

Rank 5 · TkA06G119330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box8-43 aa

PF12937F-box-like9-39 aa

PF23247LRR_RPS276-109 aa

PF23622LRR_At1g61320_AtMIF178-287 aa

PF24758LRR_At5g56370104-216 aa

PF23247LRR_RPS2125-165 aa

PF25019LRR_R13L1-DRL21126-189 aa

PF25019LRR_R13L1-DRL21177-211 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G119330	`PF00646`	F-box	8	43	4.6e-05	23.9
TkA06G119330	`PF12937`	F-box-like	9	39	0.00024	21.5
TkA06G119330	`PF23247`	LRR_RPS2	76	109	0.45	11.2
TkA06G119330	`PF23622`	LRR_At1g61320_AtMIF1	78	287	3.9e-09	37.1
TkA06G119330	`PF24758`	LRR_At5g56370	104	216	4.8e-05	23.8
TkA06G119330	`PF23247`	LRR_RPS2	125	165	0.45	11.2
TkA06G119330	`PF25019`	LRR_R13L1-DRL21	126	189	0.01	16.5
TkA06G119330	`PF25019`	LRR_R13L1-DRL21	177	211	0.01	16.5
TkA06G119330	`PF25019`	LRR_R13L1-DRL21	224	247	0.01	16.5
TkA06G119330	`PF25019`	LRR_R13L1-DRL21	264	287	0.01	16.5
TkA06G119330	`PF23247`	LRR_RPS2	280	285	0.45	11.2
TkA06G119330	`PF24758`	LRR_At5g56370	281	316	4.8e-05	23.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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