TkA06G118170 | RubberDandelionOmics

Gene overview

TkA06G118170

Reference: TK1151 Chr: Chr06 Coordinates: 30941566-30951513 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1963 bp · TkA06G118170|TK1151|cDNA

GTTAGCTATCAATGGCCCCAACTCCCTTTAATACTACTACCTGAAGTCCTGAACTACCAGGATTAACTAGTGAAAAACCCATCTGAGTTTCTTCTTTTTCATCATCATTTGTTCATATTTCTTGAAAAAAAACACAGTTTAATGCCATCTTTACTACCAAATTGCAAAACCTAGAAGCCAAATTTAACTTGTTAAACATGAAACGGGCACGATTTTGAAGATTTAAGAACAAGCTTTTGATAAAAATGGAGGAAGAAGAA...

CDS

Download CDS FASTA

1599 bp · TkA06G118170|TK1151|CDS

ATGGAGGAAGAAGAAGGGAAATCATTGGTGGAAACACCAACATGGGCAGTTGCTAGTGTTGTATCAGTCATGGTTCTTGTTGGATTCTCCATGAATGCAGCTCTTCGACACATTGAAAAGTGGTTGTGTAAAACCAAGAGGAAAGCTCTTTTTGCTGCTCTAGACAAGATTAAAGAAGAATTAATGCTGTTTGCTATTCTGTCATTGCTGATGGGTCATTGGATCGTGTATGTTTCCAAGATTTGTGTTAAATCGTCAGC...

Protein

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532 aa · TkA06G118170|TK1151|PROTEIN

MEEEEGKSLVETPTWAVASVVSVMVLVGFSMNAALRHIEKWLCKTKRKALFAALDKIKEELMLFAILSLLMGHWIVYVSKICVKSSAISSRFYPCSVDRSFTEAVHNQIYFPNYSNFTVSRQLLSHTHSEICPEGSSSFASQESLEQLHRFLFVLGVTHVSYSFFAIALAMIKIYSWRIWENQAKSMAQPRPQGMTRLSTFIDRNTAHPWTQHNILVWLLCFSRQIWSSINRTDYRALRMGFITTHNLPPSYDFHNYMLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G118170`
TK1151 ID	TkA06G118170
OH-1004 ID	LXL04_024670
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G118170

Location Chr06:30941566-30951513 (-)

Description Similar to MLO4: MLO-like protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g11000`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At5g53760`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At1g26700`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At1g61560`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At2g39200`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YD22`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`Os06g0486300`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024670 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT1G11000

ath:AT1G26700

ath:AT1G61560

ath:AT4G02600

ath:AT5G53760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.700

Rank 1 · TkA06G118170 · TK1151

Endoplasmic reticulum0.141

Rank 2 · TkA06G118170 · TK1151

Lysosome / Vacuole0.121

Rank 3 · TkA06G118170 · TK1151

Cytoplasm0.107

Rank 4 · TkA06G118170 · TK1151

Nucleus0.062

Rank 5 · TkA06G118170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03094Mlo7-456 aa

PF30499ABC1_cyano_C14-29 aa

PF30499ABC1_cyano_C279-319 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G118170	`PF03094`	Mlo	7	456	1.6e-151	505.7
TkA06G118170	`PF30499`	ABC1_cyano_C	14	29	0.65	10.8
TkA06G118170	`PF30499`	ABC1_cyano_C	279	319	0.65	10.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23693`	Arabidopsis thaliana	sp\|O23693\|MLO4_ARATH MLO-like protein 4	50.000%	Swiss-Prot	High
`Q9FI00`	Arabidopsis thaliana	sp\|Q9FI00\|MLO11_ARATH MLO-like protein 11	41.000%	Swiss-Prot	Medium
`Q94KB1`	Arabidopsis thaliana	sp\|Q94KB1\|MLO14_ARATH MLO-like protein 14	40.500%	Swiss-Prot	Medium
`Q94KB7`	Arabidopsis thaliana	sp\|Q94KB7\|MLO6_ARATH MLO-like protein 6	34.500%	Swiss-Prot	Medium
`O80961`	Arabidopsis thaliana	sp\|O80961\|MLO12_ARATH MLO-like protein 12	34.500%	Swiss-Prot	Medium
`A2YD22`	Oryza sativa subsp. indica	sp\|A2YD22\|MLOH1_ORYSI MLO protein homolog 1	34.800%	Swiss-Prot	Medium
`Q0DC45`	Oryza sativa subsp. japonica	sp\|Q0DC45\|MLOH1_ORYSJ MLO protein homolog 1	35.300%	Swiss-Prot	Medium

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