TkA06G117640 | RubberDandelionOmics

Gene overview

TkA06G117640

Reference: TK1151 Chr: Chr06 Coordinates: 30821642-30823763 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1320 bp · TkA06G117640|TK1151|cDNA

TTTAGAAACATGACTTGATCTCCACCACGCAGGTAGCTATTCAACGGCATTATTTCCCGGCTAAATTAGGGTCCCTTCTCTCTCTTGATCTCCATTCTTCACCAAATAATTTCTTCTTCCCCTTTTCTCAAGGGTTTTCTATTTCCCACCTTCGATTTCCCCTTTTTGCATTTTTCCTCTAGGGTTTCGCTGGAAAACCTCCAAAAATGTCCTGTTTTTGTTACAAACAATGGTGAATTTGTCAGAGGGAGAGAAATTAA...

CDS

Download CDS FASTA

594 bp · TkA06G117640|TK1151|CDS

ATGAGCGCTTCCAGGTTTATAAAGTGCGTCACTGTCGGCGATGGTGCTGTTGGAAAAACATGTCTCTTGATTTCCTACACCAGCAATTCCTTCCCTACGGATTATGTGCCAACTGTATTTGATAATTTCAGTGCCAATGTGGTTGTGAATGGTGCGACTGTGAATCTAGGATTGTGGGACACTGCTGGACAGGAGGATTACAACAGATTAAGACCACTGAGTTATCGTGGGGCTGATGTCTTCATTCTTGCATTTTCTCT...

Protein

Download Protein FASTA

197 aa · TkA06G117640|TK1151|PROTEIN

MSASRFIKCVTVGDGAVGKTCLLISYTSNSFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKIDLRDDKQFFADHPNAVPITTAQGEELKKTIGAPAYIECSAKTQENVKAVFDSAIKVVLAPPSSKKKKGKAQKGCSIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G117640`
TK1151 ID	TkA06G117640
OH-1004 ID	LXL04_007297
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	92.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G117640

Location Chr06:30821642-30823763 (-)

Description Similar to ARAC1: Rac-like GTP-binding protein ARAC1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17800`	Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.	No verified direct reference in this release
`At3g51300`	May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes.	No verified direct reference in this release
`At4g35950`	May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007297 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0007163 establishment or maintenance of cell polarity Biological Process

GO:0007165 signal transduction Biological Process

GO:0007264 small GTPase-mediated signal transduction Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0017157 regulation of exocytosis Biological Process

GO:0030833 regulation of actin filament polymerization Biological Process

GO:0030834 regulation of actin filament depolymerization Biological Process

GO:0030865 cortical cytoskeleton organization Biological Process

KEGG gene cross-reference

ath:AT2G17800

ath:AT3G51300

ath:AT4G35950

bvg:104895157

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.585

Rank 1 · TkA06G117640 · TK1151

Cytoplasm0.409

Rank 2 · TkA06G117640 · TK1151

Nucleus0.127

Rank 3 · TkA06G117640 · TK1151

Golgi apparatus0.112

Rank 4 · TkA06G117640 · TK1151

Endoplasmic reticulum0.055

Rank 5 · TkA06G117640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf4-125 aa

PF00009GTP_EFTU5-23 aa

PF00071Ras8-177 aa

PF08477Roc8-121 aa

PF12775AAA_78-49 aa

PF00009GTP_EFTU44-176 aa

PF12775AAA_7159-185 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G117640	`PF00025`	Arf	4	125	0.0002	21.6
TkA06G117640	`PF00009`	GTP_EFTU	5	23	0.00014	22.3
TkA06G117640	`PF00071`	Ras	8	177	3.5e-51	173.7
TkA06G117640	`PF08477`	Roc	8	121	3.9e-24	85.9
TkA06G117640	`PF12775`	AAA_7	8	49	0.17	12.1
TkA06G117640	`PF00009`	GTP_EFTU	44	176	0.00014	22.3
TkA06G117640	`PF12775`	AAA_7	159	185	0.17	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38902`	Arabidopsis thaliana	sp\|Q38902\|RAC1_ARATH Rac-like GTP-binding protein ARAC1	92.900%	Swiss-Prot	High
`P92978`	Arabidopsis thaliana	sp\|P92978\|RAC11_ARATH Rac-like GTP-binding protein ARAC11	91.400%	Swiss-Prot	High
`Q9SBJ6`	Arabidopsis thaliana	sp\|Q9SBJ6\|RAC6_ARATH Rac-like GTP-binding protein ARAC6	91.900%	Swiss-Prot	High

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