TkA06G117460 | RubberDandelionOmics

Gene overview

TkA06G117460

Reference: TK1151 Chr: Chr06 Coordinates: 30764071-30766991 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1987 bp · TkA06G117460|TK1151|cDNA

ACTACTTTGCTTCTCTGTCACTATTTCTTTACTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACGCACATTGCTAGAGCAGAGACAAACGACACCGAACCCAACTTCCCCTCTGTTTTCGAGAGGGAGAGAGAAAAGAAAAAGGTACAATTTATTCCAGGAACGCTCTGAAATCTATCATCAGGAAGAAGAAGACGACGAAATTCGTCTGTGTTTTGACTAACCAATCGAGCAAATAAATGCATGGTCGC...

CDS

Download CDS FASTA

1236 bp · TkA06G117460|TK1151|CDS

ATGGCCGCAGCATGGGAACATTTCGGAGAGATTGCAAATGTGGCCCAATTAACAGGTCTGGATGCAGTCAGACTAATCGGAATGATCGTTCAAGCCGCCACCACAGCTCGTTTGCACAAAAAGAACTGCAAACAATTTGCAATGCATTTAAAATTGATCGGAAATCTTCTACAACAACTCAAAATCAGTGAGCTCAAAAGGTATCCAGAAACACGCGAGCCTCTAGAACAACTTGAAGACGCACTTAGAAGATCGTACAT...

Protein

Download Protein FASTA

411 aa · TkA06G117460|TK1151|PROTEIN

MAAAWEHFGEIANVAQLTGLDAVRLIGMIVQAATTARLHKKNCKQFAMHLKLIGNLLQQLKISELKRYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQFRKAQNEIDRYLKIIPLITLVDNARVRERLEYIEMDQREYTLDDEDRKVQDVIMKPDPSHNDTVVLKKTLSCSYPNLPFKEAIKTENEKLHMELQRSQANLDVGQCEVIQHLIEVTQVVASKSQHEQDSPQKNNMQIVVAETQYPDVKSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G117460`
TK1151 ID	TkA06G117460
OH-1004 ID	LXL04_024682
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G117460

Location Chr06:30764071-30766991 (-)

Description Similar to MCA1: Protein MID1-COMPLEMENTING ACTIVITY 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35920`	Calcium-permeable stretch-activated channel component.	Arabidopsis plasma membrane protein crucial for Ca2+ influx and touch sensing in roots.2007 · DOI: 10.1073/pnas.0607703104 MCA1 and MCA2 that mediate Ca2+ uptake have distinct and overlapping roles in Arabidopsis.2010 · DOI: 10.1104/pp.109.147371
`At2g17780`	Calcium-permeable stretch-activated channel component.	MCA1 and MCA2 that mediate Ca2+ uptake have distinct and overlapping roles in Arabidopsis.2010 · DOI: 10.1104/pp.109.147371
`At1g52200`	May be involved in heavy metals transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024682 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006816 calcium ion transport Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0007231 osmosensory signaling pathway Biological Process

GO:0033500 carbohydrate homeostasis Biological Process

GO:0048528 post-embryonic root development Biological Process

GO:0071260 cellular response to mechanical stimulus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0005262 calcium channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G14870

ath:AT2G17780

ath:AT3G18470

ath:AT4G35920

zma:100192784

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.652

Rank 1 · TkA06G117460 · TK1151

Cytoplasm0.168

Rank 2 · TkA06G117460 · TK1151

Nucleus0.118

Rank 3 · TkA06G117460 · TK1151

Endoplasmic reticulum0.106

Rank 4 · TkA06G117460 · TK1151

Lysosome / Vacuole0.079

Rank 5 · TkA06G117460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19584MCAfunc25-166 aa

PF25055DUF779225-120 aa

PF25368PUB10_N40-143 aa

PF04749PLAC879-93 aa

PF25368PUB10_N220-223 aa

PF25368PUB10_N262-295 aa

PF04749PLAC8290-387 aa

PF25368PUB10_N380-392 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G117460	`PF19584`	MCAfunc	25	166	3.7e-83	277.1
TkA06G117460	`PF25055`	DUF7792	25	120	0.00031	21.6
TkA06G117460	`PF25368`	PUB10_N	40	143	0.006	17.9
TkA06G117460	`PF04749`	PLAC8	79	93	6.2e-20	72.7
TkA06G117460	`PF25368`	PUB10_N	220	223	0.006	17.9
TkA06G117460	`PF25368`	PUB10_N	262	295	0.006	17.9
TkA06G117460	`PF04749`	PLAC8	290	387	6.2e-20	72.7
TkA06G117460	`PF25368`	PUB10_N	380	392	0.006	17.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L7E9`	Arabidopsis thaliana	sp\|Q8L7E9\|MCAC1_ARATH Protein MID1-COMPLEMENTING ACTIVITY 1	67.100%	Swiss-Prot	High
`Q3EBY6`	Arabidopsis thaliana	sp\|Q3EBY6\|MCAC2_ARATH Protein MID1-COMPLEMENTING ACTIVITY 2	60.500%	Swiss-Prot	High
`Q9M815`	Arabidopsis thaliana	sp\|Q9M815\|PCR8_ARATH Protein PLANT CADMIUM RESISTANCE 8	30.300%	Swiss-Prot	Low

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