TkA06G117240 | RubberDandelionOmics

Gene overview

TkA06G117240

Reference: TK1151 Chr: Chr06 Coordinates: 30696840-30699547 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2007 bp · TkA06G117240|TK1151|cDNA

AGACGAGGAGGGGGGGTTTTGTCTGCTGATAATAGAAAGCAAATGTTCGTTTTGTATAATCTCACAAGACAACATCACCTCAAAGACACTGATATAATTTAAAAATAACAATAAAGAAAAATGAACCTTCTCTTCACTCTCTCTTCAATTATCTTTATCTTCCCATTTCTCCTTGCCCTCTTTCTCTCTCCATCTTCATCCTCTCTCTATGCTCACAACAAAATATCCCAAAACATATACAGACATATATTTATGTACAA...

CDS

Download CDS FASTA

1218 bp · TkA06G117240|TK1151|CDS

ATGTTATCAACATTGATAAACTTTCTAAAAGCCTGCTGGCGACCCTCGGAGCGTTACCCATACACCACTTCCGACACCGCCGGCAAGCAAGAAGGTCTTCTTTGGTATAAAGACATCGGTCAGCATTTAAATGGCGAGTTCTCAATGGCGGTGGTTCAAGCTAACATGTTACTCGAAGATCAAAGCCAGATTGAATCCGGCTCATTAAGCTTTCTCGATTCTGGCCCATACGGAACTTTTATCGGCGTCTACGACGGTCA...

Protein

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405 aa · TkA06G117240|TK1151|PROTEIN

MLSTLINFLKACWRPSERYPYTTSDTAGKQEGLLWYKDIGQHLNGEFSMAVVQANMLLEDQSQIESGSLSFLDSGPYGTFIGVYDGHGGPETSRYVNDHLFQNLKRIATEQQSMSVDVIQKAFHATEEGFVSIVAKQWIVKPQLAAVGSCCLVGVICNGVLYIANAGDSRAVLGRVVKATGEIIAIQLSTEHNASIESVRQELHRLHPDDPQIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLRDPIRR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G117240`
TK1151 ID	TkA06G117240
OH-1004 ID	LXL04_024693
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G117240

Location Chr06:30696840-30699547 (-)

Description Similar to Os06g0717800: Probable protein phosphatase 2C 60

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51370`	May dephosphorylate and repress plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release
`At5g66080`	May dephosphorylate and repress plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release
`At4g38520`	Dephosphorylates and represses plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0717800`	Probable protein phosphatase 2C 60.	No verified direct reference in this release
`Os03g0137200`	Probable protein phosphatase 2C 28.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024693 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:1900036 positive regulation of cellular response to heat Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G51370

ath:AT4G38520

ath:AT5G66080

dosa:Os03g0137200

dosa:Os06g0717800

osa:4331548

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.337

Rank 1 · TkA06G117240 · TK1151

Cytoplasm0.280

Rank 2 · TkA06G117240 · TK1151

Nucleus0.184

Rank 3 · TkA06G117240 · TK1151

Endoplasmic reticulum0.144

Rank 4 · TkA06G117240 · TK1151

Golgi apparatus0.109

Rank 5 · TkA06G117240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481PP2C79-323 aa

PF09397FtsK_gamma97-124 aa

PF21351TetR_C_41124-183 aa

PF07228SpoIIE266-352 aa

PF21994AGAO-like_N2297-346 aa

PF21351TetR_C_41310-328 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G117240	`PF00481`	PP2C	79	323	7.3e-40	138.0
TkA06G117240	`PF09397`	FtsK_gamma	97	124	0.16	12.5
TkA06G117240	`PF21351`	TetR_C_41	124	183	0.17	12.9
TkA06G117240	`PF07228`	SpoIIE	266	352	0.019	15.6
TkA06G117240	`PF21994`	AGAO-like_N2	297	346	0.22	12.5
TkA06G117240	`PF21351`	TetR_C_41	310	328	0.17	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SD12`	Arabidopsis thaliana	sp\|Q9SD12\|P2C46_ARATH Probable protein phosphatase 2C 46	76.400%	Swiss-Prot	High
`Q9FKX4`	Arabidopsis thaliana	sp\|Q9FKX4\|P2C79_ARATH Probable protein phosphatase 2C 79	74.500%	Swiss-Prot	High
`Q5PNS9`	Arabidopsis thaliana	sp\|Q5PNS9\|P2C64_ARATH Probable protein phosphatase 2C 64	71.200%	Swiss-Prot	High
`Q5Z8P0`	Oryza sativa subsp. japonica	sp\|Q5Z8P0\|P2C60_ORYSJ Probable protein phosphatase 2C 60	75.700%	Swiss-Prot	High
`Q10S32`	Oryza sativa subsp. japonica	sp\|Q10S32\|P2C28_ORYSJ Probable protein phosphatase 2C 28	71.100%	Swiss-Prot	High

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