TkA06G116890 | RubberDandelionOmics

Gene overview

TkA06G116890

Reference: TK1151 Chr: Chr06 Coordinates: 30582764-30584471 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1065 bp · TkA06G116890|TK1151|cDNA

ATGACCATGGGAATGGCGATCCATCCAGCTATGTTCTTATTTGGAGATTCGTTATTGGATGTCGGAACTAATAATCACTTTCATGAATGCACGGCGAGGGCTGATCACCCTTACTATGGCATCGATTATCCTGATTCTATTGCAACAGGAAGGTTTAGTAATGGCCTCAGTAGTGCTGACTTACTTGCTTGGTACTTGAACGATTATGAATTTAGTCCGCCACCTTTTCTCACACTTACTGAAAGTTCGGCCACCTTACA...

CDS

Download CDS FASTA

1065 bp · TkA06G116890|TK1151|CDS

ATGACCATGGGAATGGCGATCCATCCAGCTATGTTCTTATTTGGAGATTCGTTATTGGATGTCGGAACTAATAATCACTTTCATGAATGCACGGCGAGGGCTGATCACCCTTACTATGGCATCGATTATCCTGATTCTATTGCAACAGGAAGGTTTAGTAATGGCCTCAGTAGTGCTGACTTACTTGCTTGGTACTTGAACGATTATGAATTTAGTCCGCCACCTTTTCTCACACTTACTGAAAGTTCGGCCACCTTACA...

Protein

Download Protein FASTA

354 aa · TkA06G116890|TK1151|PROTEIN

MTMGMAIHPAMFLFGDSLLDVGTNNHFHECTARADHPYYGIDYPDSIATGRFSNGLSSADLLAWYLNDYEFSPPPFLTLTESSATLQLELFHGTNFASAGSGILIDTGHAHFKRVVPLWEQIQQFATVRGNISQLLGNGTADLFLGISTCIVSVGSNDLFEHQNALVQNQTQPDQLIANLTATFAIHLQNLYDLGARKFGIIGVPPLGCCPKERYIDTQMGGNGSCVDAMNDLAQAFHASTESLLRNFSSTNQGVVYSLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G116890`
TK1151 ID	TkA06G116890
OH-1004 ID	LXL04_024701
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 94.652 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G116890

Location Chr06:30582764-30584471 (+)

Description Similar to At5g33370: GDSL esterase/lipase At5g33370

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g33370`	GDSL esterase/lipase At5g33370.	No verified direct reference in this release
`At4g28780`	GDSL esterase/lipase At4g28780.	No verified direct reference in this release
`At5g37690`	GDSL esterase/lipase At5g37690.	No verified direct reference in this release
`At5g08460`	GDSL esterase/lipase At5g08460.	No verified direct reference in this release
`At5g18430`	GDSL esterase/lipase At5g18430.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_024701 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0160062 cutin-based cuticle development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G71250

ath:AT4G28780

ath:AT5G18430

ath:AT5G33370

ath:AT5G37690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.308

Rank 1 · TkA06G116890 · TK1151

Lysosome / Vacuole0.166

Rank 2 · TkA06G116890 · TK1151

Cytoplasm0.142

Rank 3 · TkA06G116890 · TK1151

Cell membrane0.140

Rank 4 · TkA06G116890 · TK1151

Endoplasmic reticulum0.119

Rank 5 · TkA06G116890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL12-327 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G116890	`PF00657`	Lipase_GDSL	12	327	6.3e-21	76.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LB81`	Arabidopsis thaliana	sp\|Q8LB81\|GDL79_ARATH GDSL esterase/lipase At5g33370	35.000%	Swiss-Prot	Medium
`Q9SVU5`	Arabidopsis thaliana	sp\|Q9SVU5\|GDL67_ARATH GDSL esterase/lipase At4g28780	34.000%	Swiss-Prot	Medium
`Q9FHQ1`	Arabidopsis thaliana	sp\|Q9FHQ1\|GDL80_ARATH GDSL esterase/lipase At5g37690	34.700%	Swiss-Prot	Medium
`Q9FNP2`	Arabidopsis thaliana	sp\|Q9FNP2\|GDL75_ARATH GDSL esterase/lipase At5g08460	34.500%	Swiss-Prot	Medium
`Q5PNZ0`	Arabidopsis thaliana	sp\|Q5PNZ0\|GDL77_ARATH GDSL esterase/lipase At5g18430	34.500%	Swiss-Prot	Medium

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