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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G114480
Reference: TK1151 Chr: Chr06 Coordinates: 29942083-29942649 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

567 bp · TkA06G114480|TK1151|cDNA

ATGACTCGTCCGTATAGATTACTATCGACTGCCGTCAACTCGTCGTCGAAGGCGGCGGAAGAATCGCCGGAGGTAGTCTCCGTGGAGTCAGATTTCGTCGTCATCTTCGCCGCTCTACTATGTGCTCTGGTTTGTATCGTAAGTTTGATAGTTGTAGCTCGCTGCGCTTGGCTCAGGCGCAGATCTCTAGCCAATAGCTTACCTGGCCAACAGTCTGCTAATAAAGGAATTAAGAAGAAATTCATCGAGGCGCTTCCGAA...

CDS

Download CDS FASTA

567 bp · TkA06G114480|TK1151|CDS

ATGACTCGTCCGTATAGATTACTATCGACTGCCGTCAACTCGTCGTCGAAGGCGGCGGAAGAATCGCCGGAGGTAGTCTCCGTGGAGTCAGATTTCGTCGTCATCTTCGCCGCTCTACTATGTGCTCTGGTTTGTATCGTAAGTTTGATAGTTGTAGCTCGCTGCGCTTGGCTCAGGCGCAGATCTCTAGCCAATAGCTTACCTGGCCAACAGTCTGCTAATAAAGGAATTAAGAAGAAATTCATCGAGGCGCTTCCGAA...

Protein

Download Protein FASTA

188 aa · TkA06G114480|TK1151|PROTEIN

MTRPYRLLSTAVNSSSKAAEESPEVVSVESDFVVIFAALLCALVCIVSLIVVARCAWLRRRSLANSLPGQQSANKGIKKKFIEALPKFKYDSAKDDNGGKLSSGDCAICLAEYADGDEIRVLPQCGHGFHVGCIDKWLGSHSSCPSCRQILVISRCKKCGEFPTISAGKITLVVDQEGRQHHDSSSSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G114480
TK1151 IDTkA06G114480
OH-1004 IDLXL04_024727
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G114480
LocationChr06:29942083-29942649 (-)
DescriptionSimilar to ATL44: Probable E3 ubiquitin-protein ligase ATL44
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17450 E3 ubiquitin-protein ligase that possess E3 ubiquitin ligase activity in vitro and mediates protein monoubiquitination.
Ligand-induced monoubiquitination of BIK1 regulates plant immunity.2020 · DOI: 10.1038/s41586-020-2210-3
At1g76410 RING-H2 finger protein ATL8. No verified direct reference in this release
At1g20823 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At4g35480 E3 ubiquitin-protein ligase that possess E3 ubiquitin ligase activity in vitro and mediates protein monoubiquitination.
Ligand-induced monoubiquitination of BIK1 regulates plant immunity.2020 · DOI: 10.1038/s41586-020-2210-3
At1g49230 RING-H2 finger protein ATL78. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024727 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006513 protein monoubiquitination Biological Process
GO:0006952 defense response Biological Process
GO:0009555 pollen development Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0010966 regulation of phosphate transport Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0048443 stamen development Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0070417 cellular response to cold Biological Process
GO:0080141 regulation of jasmonic acid biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G20823
ath:AT1G76410
ath:AT2G17450
ath:AT4G35480
ath:AT5G05280
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.457
Rank 1 · TkA06G114480 · TK1151
Endoplasmic reticulum0.246
Rank 2 · TkA06G114480 · TK1151
Lysosome / Vacuole0.199
Rank 3 · TkA06G114480 · TK1151
Cytoplasm0.144
Rank 4 · TkA06G114480 · TK1151
Nucleus0.119
Rank 5 · TkA06G114480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20970MASE1014-65 aa
PF05439JTB28-62 aa
PF13920zf-C3HC4_3104-149 aa
PF13639zf-RING_2105-148 aa
PF17123zf-RING_11105-134 aa
PF14634zf-RING_5105-149 aa
PF14446Prok-RING_1105-136 aa
PF11793FANCL_C105-159 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G114480PF20970MASE1014650.0613.8
TkA06G114480PF05439JTB28620.1812.6
TkA06G114480PF13920zf-C3HC4_31041490.0004620.7
TkA06G114480PF13639zf-RING_21051485.2e-1659.4
TkA06G114480PF17123zf-RING_111051348e-1245.4
TkA06G114480PF14634zf-RING_51051494.6e-0627.2
TkA06G114480PF14446Prok-RING_11051360.02415.5
TkA06G114480PF11793FANCL_C1051590.03815.0
TkA06G114480PF13923zf-C3HC4_21061471.1e-0938.6
TkA06G114480PF00097zf-C3HC41061471.4e-0731.9
TkA06G114480PF13445zf-RING_UBOX1061450.0001622.3
TkA06G114480PF23412zf_RING_Vps81061360.00318.1
TkA06G114480PF14570zf-RING_41061490.02914.9
TkA06G114480PF12678zf-rbx11131483.6e-0834.2
TkA06G114480PF12861zf-ANAPC111151531.2e-0629.2
TkA06G114480PF23413zf_RING_Vps8_fungal1211490.002218.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22755Arabidopsis thalianasp|O22755|ATL44_ARATH Probable E3 ubiquitin-protein ligase ATL4450.500%Swiss-ProtHigh
Q8LC69Arabidopsis thalianasp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL856.000%Swiss-ProtHigh
Q9LM69Arabidopsis thalianasp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL8050.800%Swiss-ProtHigh
Q9ZT49Arabidopsis thalianasp|Q9ZT49|ATL45_ARATH Probable E3 ubiquitin-protein ligase ATL4545.700%Swiss-ProtMedium
Q6NQG7Arabidopsis thalianasp|Q6NQG7|ATL78_ARATH RING-H2 finger protein ATL7838.900%Swiss-ProtMedium

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