TkA06G105860 | RubberDandelionOmics

Gene overview

TkA06G105860

Reference: TK1151 Chr: Chr06 Coordinates: 27998075-27999069 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

871 bp · TkA06G105860|TK1151|cDNA

AAACAAATAAAAACAAAGAGATCTTAAAATGGGGAAGGATGATGTGAAGCTTCTAAGCATGTGGGCTAGTCCTTTTTGCATGAGGGTGAAGGTTGCATTGGCTGAAAAAGACATTCCTTATGAGGAGATTTTAGAGAACAATTTGTTGGGTGGAAAGACCGAGTTGTTGCTAAAATCAAACCCTGTCCACCAACAAGTTCCTGTCCTCTTGCATGACGAAAAGCCCATCCTCGAGTCCACTAACATTGTAACTTACATCG...

CDS

Download CDS FASTA

669 bp · TkA06G105860|TK1151|CDS

ATGGGGAAGGATGATGTGAAGCTTCTAAGCATGTGGGCTAGTCCTTTTTGCATGAGGGTGAAGGTTGCATTGGCTGAAAAAGACATTCCTTATGAGGAGATTTTAGAGAACAATTTGTTGGGTGGAAAGACCGAGTTGTTGCTAAAATCAAACCCTGTCCACCAACAAGTTCCTGTCCTCTTGCATGACGAAAAGCCCATCCTCGAGTCCACTAACATTGTAACTTACATCGATGAAGTTTGGCCTTCCAAACCTCTCTT...

Protein

Download Protein FASTA

222 aa · TkA06G105860|TK1151|PROTEIN

MGKDDVKLLSMWASPFCMRVKVALAEKDIPYEEILENNLLGGKTELLLKSNPVHQQVPVLLHDEKPILESTNIVTYIDEVWPSKPLLPTCAYEKARARFWADYIDRKVHPAGRAIWTAKGEDELEAAKKAFLDILMFLDGTLGDKDYFSGENFGFVDILLIGLTSWFPAFEIYGSFTVEEHYPRLAAWITRSYARRTVSESLANPEKIINFVVMLRQMFGIE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G105860`
TK1151 ID	TkA06G105860
OH-1004 ID	LXL04_024816
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G105860

Location Chr06:27998075-27999069 (+)

Description Similar to Probable glutathione S-transferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17180`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release
`At1g78380`	Catalyzes the glutathionylation of 12-oxophytodienoate (OPDA).	Probing the diversity of the Arabidopsis glutathione S-transferase gene family.2002 · DOI: 10.1023/a:1015557300450 Organ-specific expression of glutathione S-transferases and the efficacy of herbicide safeners in Arabidopsis.2006 · DOI: 10.1104/pp.105.067199 Selective binding of glutathione conjugates of fatty acid derivatives by plant glutathione transferases.2009 · DOI: 10.1074/jbc.m109.020107

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024816 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009407 toxin catabolic process Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0042631 cellular response to water deprivation Biological Process

GO:0046256 2,4,6-trinitrotoluene catabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G17180

ath:AT1G78380

nta:107772524

nta:107782951

nta:107823949

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.838

Rank 1 · TkA06G105860 · TK1151

Nucleus0.222

Rank 2 · TkA06G105860 · TK1151

Endoplasmic reticulum0.063

Rank 3 · TkA06G105860 · TK1151

Mitochondrion0.057

Rank 4 · TkA06G105860 · TK1151

Peroxisome0.046

Rank 5 · TkA06G105860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02798GST_N6-79 aa

PF13417GST_N_38-79 aa

PF13409GST_N_213-79 aa

PF17172GST_N_415-112 aa

PF00462Glutaredoxin15-34 aa

PF17171GST_C_669-79 aa

PF00043GST_C115-195 aa

PF22041GST_C_7118-167 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G105860	`PF02798`	GST_N	6	79	1.6e-15	57.9
TkA06G105860	`PF13417`	GST_N_3	8	79	1.4e-13	51.7
TkA06G105860	`PF13409`	GST_N_2	13	79	3.5e-12	47.5
TkA06G105860	`PF17172`	GST_N_4	15	112	0.0052	18.2
TkA06G105860	`PF00462`	Glutaredoxin	15	34	0.21	12.5
TkA06G105860	`PF17171`	GST_C_6	69	79	0.053	14.0
TkA06G105860	`PF00043`	GST_C	115	195	3.1e-11	44.1
TkA06G105860	`PF22041`	GST_C_7	118	167	0.15	12.7
TkA06G105860	`PF13410`	GST_C_2	122	191	5.8e-09	36.7
TkA06G105860	`PF14497`	GST_C_3	125	200	0.1	13.6
TkA06G105860	`PF17171`	GST_C_6	137	165	0.053	14.0
TkA06G105860	`PF16865`	GST_C_5	138	200	0.14	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SHH7`	Arabidopsis thaliana	sp\|Q9SHH7\|GSTUP_ARATH Glutathione S-transferase U25	50.500%	Swiss-Prot	High
`Q9ZRW8`	Arabidopsis thaliana	sp\|Q9ZRW8\|GSTUJ_ARATH Glutathione S-transferase U19	48.400%	Swiss-Prot	Medium

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