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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G102290
Reference: TK1151 Chr: Chr06 Coordinates: 27166334-27169051 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2300 bp · TkA06G102290|TK1151|cDNA

ATCATCTCCATTCTTTCTCTCTAAAACGATACTCTGTTTCTACGATTTCAGATCAAAAACACTTATTCAAACCTGGAGCCGCTCACTAATGTCGATTCCCATTATCAAGATGATCGGAGCTAGTAATACCAGCAAGAAGCGAAAGATGAAATCAGCAAAGTATTACGGATTACAGAGCTTTCTTCAACCTGGTTGCCCACTCTCGTTGTCTGGTTCGTTTAGAGACAATGTCAGGAGATTTATTCAAGAATGCGGTCAGC...

CDS

Download CDS FASTA

987 bp · TkA06G102290|TK1151|CDS

ATGAGTCGACAGGAGGTCCGGGATACTGCCAGACAACACATCGGGGACACGGGTTTGATCGATTACGTCTTGAAATCGATGAATAACGTGATTGTTGGCGGGTATGTGGTCAGACGTGCGGTCAACTCTTGCACCGGTGTTCTTGAGTATTCGCTTCAAGAGACACCCGGAGGCGGAAGCACAAATCAGGAACCGGAGGAGATCGACCGAGTTGACTCACCTAGGTATAGCTCGGTTTCGGGGAGGGATGTATACAAAGA...

Protein

Download Protein FASTA

328 aa · TkA06G102290|TK1151|PROTEIN

MSRQEVRDTARQHIGDTGLIDYVLKSMNNVIVGGYVVRRAVNSCTGVLEYSLQETPGGGSTNQEPEEIDRVDSPRYSSVSGRDVYKDIQFLCYHLLLESDSDDVGFAVKTVMDSKHFAKEWPFHDDADEYLRFICRVIPSVTTELNLETGLYKRKNSVGEELVVPLHATIHDLKSAAETAMRDTYCIMENLKVREIAELEGVDDDEVIFGMLESGSEISVRGSGIDLLTSGDLNYEGGADNWVVSCKCGARDDDGERMVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G102290
TK1151 IDTkA06G102290
OH-1004 IDLXL04_024846
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 48.235
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G102290
LocationChr06:27166334-27169051 (-)
DescriptionSimilar to MMD1: PHD finger protein MALE MEIOCYTE DEATH 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g66170 Probable transcription factor required for chromosome organization and progression during male meiosis (e.g. microsporogenesis).
The Arabidopsis MALE MEIOCYTE DEATH1 gene encodes a PHD-finger protein that is required for male meiosis.2003 · DOI: 10.1105/tpc.010447
The DUET gene is necessary for chromosome organization and progression during male meiosis in Arabidopsis and encodes a PHD finger protein.2003 · DOI: 10.1242/dev.00827
The PHD Finger Protein MMD1/DUET Ensures the Progression of Male Meiotic Chromosome Condensation and Directly Regulates the Expression of the Condensin Gene CAP-D3.2016 · DOI: 10.1105/tpc.16.00040
Cell-type-dependent histone demethylase specificity promotes meiotic chromosome condensation in Arabidopsis.2020 · DOI: 10.1038/s41477-020-0697-0
At2g01810 PHD finger protein At2g01810. No verified direct reference in this release
At5g22260 Transcriptional activator required for anther and post-meiotic pollen development and maturation. No verified direct reference in this release
At1g33420 PHD finger protein At1g33420. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0449000 Probable transcriptional activator required for tapetal programmed cell death (PCD) and degeneration, and pollen development in anthers.
PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice.2011 · DOI: 10.1104/pp.111.175760
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024846 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000212 meiotic spindle organization Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0007060 male meiosis chromosome segregation Biological Process
GO:0007140 male meiotic nuclear division Biological Process
GO:0009555 pollen development Biological Process
GO:0009846 pollen germination Biological Process
GO:0010032 meiotic chromosome condensation Biological Process
GO:0010208 pollen wall assembly Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0022414 reproductive process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
KEGG gene cross-reference
ath:AT1G33420
ath:AT1G66170
ath:AT2G01810
ath:AT5G22260
dosa:Os09g0449000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.735
Rank 1 · TkA06G102290 · TK1151
Cytoplasm0.311
Rank 2 · TkA06G102290 · TK1151
Cell membrane0.053
Rank 3 · TkA06G102290 · TK1151
Endoplasmic reticulum0.035
Rank 4 · TkA06G102290 · TK1151
Lysosome / Vacuole0.026
Rank 5 · TkA06G102290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25874WHD_plant_repro1-54 aa
PF25565Ubiquitin_At1g3342014-35 aa
PF20826PHD_543-54 aa
PF30811PHD_UBR7-like125-136 aa
PF25565Ubiquitin_At1g33420128-224 aa
PF20826PHD_5128-136 aa
PF25874WHD_plant_repro171-184 aa
PF20826PHD_5238-292 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G102290PF25874WHD_plant_repro1542.2e-2589.1
TkA06G102290PF25565Ubiquitin_At1g3342014351.7e-2795.8
TkA06G102290PF20826PHD_543545.1e-0627.2
TkA06G102290PF30811PHD_UBR7-like1251360.05414.2
TkA06G102290PF25565Ubiquitin_At1g334201282241.7e-2795.8
TkA06G102290PF20826PHD_51281365.1e-0627.2
TkA06G102290PF25874WHD_plant_repro1711842.2e-2589.1
TkA06G102290PF20826PHD_52382925.1e-0627.2
TkA06G102290PF00628PHD2462901.1e-0732.5
TkA06G102290PF31197PHD_JHD12482720.02415.2
TkA06G102290PF30811PHD_UBR7-like2532930.05414.2
TkA06G102290PF29369IOC2_C2552724.77.0
TkA06G102290PF13831PHD_22582900.01715.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7X6Y7Arabidopsis thalianasp|Q7X6Y7|MMD1_ARATH PHD finger protein MALE MEIOCYTE DEATH 146.000%Swiss-ProtMedium
Q9ZUA9Arabidopsis thalianasp|Q9ZUA9|Y2181_ARATH PHD finger protein At2g0181041.300%Swiss-ProtMedium
Q9FMS5Arabidopsis thalianasp|Q9FMS5|MS1_ARATH PHD finger protein MALE STERILITY 131.300%Swiss-ProtMedium
Q9C810Arabidopsis thalianasp|Q9C810|Y1342_ARATH PHD finger protein At1g3342030.400%Swiss-ProtMedium
Q67V61Oryza sativa subsp. japonicasp|Q67V61|PTC1_ORYSJ PHD finger protein PERSISTENT TAPETAL CELL 132.400%Swiss-ProtMedium

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