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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G102240
Reference: TK1151 Chr: Chr06 Coordinates: 27141943-27147435 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2950 bp · TkA06G102240|TK1151|cDNA

TTCCTGTATTTTTTTATTTTGAATGGCTTACATAAATAGTGCTATGCTATCATCGTCTTCTACATCCATCTTCCATTCAAATTGTTCTCTCTCCTTCCATCTCTTTCGCCACTTGTTTACAGACCTCATTTCCCGTGACATTTTGCTCATTTACAAACAGTTAATCAATCTGCCAATCCTCATTACTGCCCTAGTCATTCTGTAGAACCCATACACAACTCTCACTACTTCCATCAACCATCATCATTTAATTAGGTCAT...

CDS

Download CDS FASTA

2532 bp · TkA06G102240|TK1151|CDS

ATGAGGATCGGATCAACGACAGTGGCTCACAGAGAAAAGGAAAGGCGGAGGAAGGCGGTGGAAGATTCCGATCAGGATGAAGTTGTGGGGGAGGAGTACGTGGTGGAGGACGTGCGAGATCACGATCACGGGAGGTTAGCGAAACGTCGGAGTCGGTTCACGTTATTGGCAGGGGATCTTGGCCTAGATCAGAATCGTAGAGTTTTCAGCAGAGATAAATTCATCGATGGCATCAAAGGATGCTCTCCTGGCTTCTACAT...

Protein

Download Protein FASTA

843 aa · TkA06G102240|TK1151|PROTEIN

MRIGSTTVAHREKERRRKAVEDSDQDEVVGEEYVVEDVRDHDHGRLAKRRSRFTLLAGDLGLDQNRRVFSRDKFIDGIKGCSPGFYIHPQNSWYRAWEKFILIWAVYSSFFTPMEFGFFRGLPKNLYFLDIAGQLAFLIDVGLHFFIAYRDTQTYKMISNRNLIAVRYLKSHFLFDILACMPWDNIYRASGRKEEVRYLLLLRLVRVRKVLEFFSRLEKDIRVNYLFSRIIKLIAVELYCTHTAACIFYYLATTLPAVEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G102240
TK1151 IDTkA06G102240
OH-1004 IDLXL04_024848
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 95.254
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G102240
LocationChr06:27141943-27147435 (+)
DescriptionSimilar to SKOR: Potassium channel SKOR
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g02850 Highly selective outward-rectifying potassium channel.
Identification and disruption of a plant shaker-like outward channel involved in K+ release into the xylem sap.1998 · DOI: 10.1016/s0092-8674(00)81606-2
At5g37500 Major selective outward-rectifying potassium channel of the guard cell membrane.
The Arabidopsis outward K+ channel GORK is involved in regulation of stomatal movements and plant transpiration.2003 · DOI: 10.1073/pnas.0733970100
At2g26650 May act as a highly selective inward-rectifying potassium channel mediating root potassium uptake under low K⁺ conditions.
Regulated expression of Arabidopsis shaker K+ channel genes involved in K+ uptake and distribution in the plant.2003 · DOI: 10.1023/a:1022597102282
A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis.2006 · DOI: 10.1016/j.cell.2006.06.011
A Ca(2)+ signaling pathway regulates a K(+) channel for low-K response in Arabidopsis.2006 · DOI: 10.1073/pnas.0605129103
A protein phosphorylation/dephosphorylation network regulates a plant potassium channel.2007 · DOI: 10.1073/pnas.0707912104
High-affinity K(+) transport in Arabidopsis: AtHAK5 and AKT1 are vital for seedling establishment and postgermination growth under low-potassium conditions.2010 · DOI: 10.1104/pp.110.154369
A role for the AKT1 potassium channel in plant nutrition.1998 · DOI: 10.1126/science.280.5365.918

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0250600 Probable outward-rectifying potassium channel. No verified direct reference in this release
Os04g0445000 Probable outward-rectifying potassium channel. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024848 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006811 monoatomic ion transport Biological Process
GO:0006813 potassium ion transport Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0010118 stomatal movement Biological Process
GO:0048767 root hair elongation Biological Process
GO:0051592 response to calcium ion Biological Process
GO:0055075 potassium ion homeostasis Biological Process
GO:0090333 regulation of stomatal closure Biological Process
KEGG gene cross-reference
ath:AT2G26650
ath:AT3G02850
ath:AT5G37500
dosa:Os04g0445000
dosa:Os06g0250600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.713
Rank 1 · TkA06G102240 · TK1151
Cytoplasm0.167
Rank 2 · TkA06G102240 · TK1151
Endoplasmic reticulum0.112
Rank 3 · TkA06G102240 · TK1151
Lysosome / Vacuole0.068
Rank 4 · TkA06G102240 · TK1151
Golgi apparatus0.062
Rank 5 · TkA06G102240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00027cNMP_binding7-36 aa
PF00520Ion_trans94-344 aa
PF12796Ank_2157-200 aa
PF13857Ank_5157-169 aa
PF13606Ank_3158-177 aa
PF13637Ank_4189-200 aa
PF07885Ion_trans_2283-340 aa
PF00027cNMP_binding434-519 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G102240PF00027cNMP_binding7361.3e-1867.5
TkA06G102240PF00520Ion_trans943441.8e-28100.1
TkA06G102240PF12796Ank_21572006.1e-2898.0
TkA06G102240PF13857Ank_51571694.2e-1969.1
TkA06G102240PF13606Ank_31581779.8e-1759.9
TkA06G102240PF13637Ank_41892002e-2898.5
TkA06G102240PF07885Ion_trans_22833406.3e-0833.1
TkA06G102240PF00027cNMP_binding4345191.3e-1867.5
TkA06G102240PF13637Ank_45686132e-2898.5
TkA06G102240PF12796Ank_25686536.1e-2898.0
TkA06G102240PF00023Ank5685907.2e-2792.7
TkA06G102240PF13606Ank_35755879.8e-1759.9
TkA06G102240PF13857Ank_55796304.2e-1969.1
TkA06G102240PF00023Ank5926247.2e-2792.7
TkA06G102240PF13606Ank_35926209.8e-1759.9
TkA06G102240PF24521Ank_KRIT15956500.002118.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M8S6Arabidopsis thalianasp|Q9M8S6|SKOR_ARATH Potassium channel SKOR65.900%Swiss-ProtHigh
Q94A76Arabidopsis thalianasp|Q94A76|GORK_ARATH Potassium channel GORK63.600%Swiss-ProtHigh
Q38998Arabidopsis thalianasp|Q38998|AKT1_ARATH Potassium channel AKT137.000%Swiss-ProtMedium
Q653P0Oryza sativa subsp. japonicasp|Q653P0|KOR1_ORYSJ Potassium channel KOR163.300%Swiss-ProtHigh
Q7XUW4Oryza sativa subsp. japonicasp|Q7XUW4|KOR2_ORYSJ Potassium channel KOR258.200%Swiss-ProtHigh

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