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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G099730
Reference: TK1151 Chr: Chr06 Coordinates: 26593123-26594188 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

861 bp · TkA06G099730|TK1151|cDNA

ATATGATAAAAATTAAAGTACTATAACTATCAAAATAAAAACAATGCAACTCTATGTAAAATTAGATAAGAAACTCCTAGACATTCCAGAGAGTTCCTTACTTCCTCCATAAATCCAATCTCTACTCTACCGAATTACTCCCACCAAATTGTCTCCGAAATGGCTTTATTCAGTGATCCATTTAGACGATTCTTCTTCAGCCCTCCGATCTATCGCAGCGGTTCAGTAACAGGCCTCATGGATTGGTTCGAAACATCACA...

CDS

Download CDS FASTA

447 bp · TkA06G099730|TK1151|CDS

ATGGCTTTATTCAGTGATCCATTTAGACGATTCTTCTTCAGCCCTCCGATCTATCGCAGCGGTTCAGTAACAGGCCTCATGGATTGGTTCGAAACATCACAAGCTCACTTCATCAAAATCAACGTCCCAGGGTATAGCAAAGAGGACGTGAAGGTGCAGGTGGAAGAAGGGAACGTGTTGGTGGTGAGAGGTGAAGGCGGAAAAGAAATGTCAAAAGAAAAGGAGAGGGAGAAGGAGAAGAGGATTGTTTGGCATGTTGC...

Protein

Download Protein FASTA

148 aa · TkA06G099730|TK1151|PROTEIN

MALFSDPFRRFFFSPPIYRSGSVTGLMDWFETSQAHFIKINVPGYSKEDVKVQVEEGNVLVVRGEGGKEMSKEKEREKEKRIVWHVAERGGGGGVEGVGFSREIELPEDVKVDQIKAQVENGVLTVVLPKDLSPKSSKVRNIHVSSKL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G099730
TK1151 IDTkA06G099730
OH-1004 IDLXL04_012329
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)44.500
Protein coverage (%)TK1151 80.405 / OH-1004 66.879
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G099730
LocationChr06:26593123-26594188 (-)
DescriptionSimilar to HSP17.6C: 17.6 kDa class I heat shock protein 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g37670 Possesses chaperone activity.
Identification and characterization of a stress-inducible and a constitutive small heat-shock protein targeted to the matrix of plant peroxisomes.2006 · DOI: 10.1104/pp.105.073841
At1g59860 Possesses chaperone activity.
At-HSP17.6A, encoding a small heat-shock protein in Arabidopsis, can enhance osmotolerance upon overexpression.2001 · DOI: 10.1046/j.1365-313x.2001.01107.x

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0253100 16.0 kDa heat shock protein, peroxisomal. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012329 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0009408 response to heat Biological Process
GO:0009651 response to salt stress Biological Process
GO:0042542 response to hydrogen peroxide Biological Process
GO:0051259 protein complex oligomerization Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0051082 unfolded protein binding Molecular Function
KEGG gene cross-reference
ath:AT1G53540
gmx:100305750
gmx:100499727
gmx:100526870
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.440
Rank 1 · TkA06G099730 · TK1151
Peroxisome0.312
Rank 2 · TkA06G099730 · TK1151
Nucleus0.239
Rank 3 · TkA06G099730 · TK1151
Mitochondrion0.130
Rank 4 · TkA06G099730 · TK1151
Endoplasmic reticulum0.098
Rank 5 · TkA06G099730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF31004IDM_C19-81 aa
PF04969CS27-130 aa
PF00011HSP2028-145 aa
PF29697GerT_C30-60 aa
PF27746Small_heat_shock_put35-129 aa
PF18046FKBP26_C37-60 aa
PF17886ArsA_HSP2038-127 aa
PF23444DUF712744-70 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G099730PF31004IDM_C19810.003717.6
TkA06G099730PF04969CS271302.7e-0525.8
TkA06G099730PF00011HSP20281454.1e-1866.1
TkA06G099730PF29697GerT_C30600.0007220.2
TkA06G099730PF27746Small_heat_shock_put351290.0001521.9
TkA06G099730PF18046FKBP26_C37600.07413.9
TkA06G099730PF17886ArsA_HSP20381270.001718.6
TkA06G099730PF23444DUF712744700.02915.5
TkA06G099730PF19671DUF6174451250.08313.9
TkA06G099730PF04972BON46720.03815.0
TkA06G099730PF29697GerT_C1011260.0007220.2
TkA06G099730PF23444DUF71271031260.02915.5
TkA06G099730PF18046FKBP26_C1061320.07413.9
TkA06G099730PF04972BON1071250.03815.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FHQ3Arabidopsis thalianasp|Q9FHQ3|HS157_ARATH 15.7 kDa heat shock protein, peroxisomal58.800%Swiss-ProtHigh
Q9XIE3Arabidopsis thalianasp|Q9XIE3|HS17A_ARATH 17.6 kDa class I heat shock protein 142.600%Swiss-ProtMedium
Q652V8Oryza sativa subsp. japonicasp|Q652V8|HSP16_ORYSJ 16.0 kDa heat shock protein, peroxisomal53.400%Swiss-ProtHigh

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