TkA06G095890 | RubberDandelionOmics

Gene overview

TkA06G095890

Reference: TK1151 Chr: Chr06 Coordinates: 25495395-25499885 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3123 bp · TkA06G095890|TK1151|cDNA

CCTACATAGTGAGGACTTGTTTATCTGTGAATTCAATTTGGAAATGCCTAAGGTACCCTAAACCTCCATGACTACCACCTTTTAGTGCAACTATCACCTTCAAAACCGAGACAATGACTTCATTGACCTGCACCAACTTCACACTGCTCACCACAGCTTCAATTCTGCTTCAGATCGCCGGTCTCTGGCTCTTCGTCTTTGGATTCTTCCCTATTAAACCAGCTCTCTCCGGTGTCAGTGGACCAGAGAGTTTCCGGCCT...

CDS

Download CDS FASTA

2727 bp · TkA06G095890|TK1151|CDS

ATGACTTCATTGACCTGCACCAACTTCACACTGCTCACCACAGCTTCAATTCTGCTTCAGATCGCCGGTCTCTGGCTCTTCGTCTTTGGATTCTTCCCTATTAAACCAGCTCTCTCCGGTGTCAGTGGACCAGAGAGTTTCCGGCCTCCCTCACGCGATTCAATTGAGGATCAAAATGTCACAGCTCTGCATCCCGACCAGCTTAAGTCATTGTACCAGGAACTTTCTGAGATCCCACCTTCTTATGACCGATTGATACT...

Protein

Download Protein FASTA

908 aa · TkA06G095890|TK1151|PROTEIN

MTSLTCTNFTLLTTASILLQIAGLWLFVFGFFPIKPALSGVSGPESFRPPSRDSIEDQNVTALHPDQLKSLYQELSEIPPSYDRLILMVIDGLPAEFVLGRDGEPPLKTLKDAMPYTQSLLANKMALGFHSKAAPPTVTLPRLKAMTTGSIGGFLDVLFNFNTQALLEDNIVGQLFRIGWKMVMFGDETWLKLFPGLFTQHDGVSSFFVKDTVQVDHNVSRHLNHELFKSDWNLLILHYLGLDHVGHLGGRTSSLMGPKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G095890`
TK1151 ID	TkA06G095890
OH-1004 ID	LXL04_024915
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA06G095890`
Location	Chr06:25495395-25499885 (-)
Description	Similar to LAS21: GPI ethanolamine phosphate transferase 2 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024915` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006506 GPI anchor biosynthetic process Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0016740 transferase activity Molecular Function GO:0016780 phosphotransferase activity, for other substituted phosphate groups Molecular Function GO:0051267 CP2 mannose-ethanolamine phosphotransferase activity Molecular Function
KEGG gene cross-reference	afm:AFUA_6G05260 hsa:54872 kla:KLLA0_F01705g These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.726

Rank 1 · TkA06G095890 · TK1151

Nucleus0.115

Rank 2 · TkA06G095890 · TK1151

Golgi apparatus0.095

Rank 3 · TkA06G095890 · TK1151

Cell membrane0.084

Rank 4 · TkA06G095890 · TK1151

Cytoplasm0.080

Rank 5 · TkA06G095890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01663Phosphodiest85-150 aa

PF01663Phosphodiest225-298 aa

PF00884Sulfatase260-346 aa

PF19316PIGO_PIGG459-891 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G095890	`PF01663`	Phosphodiest	85	150	3.4e-07	30.9
TkA06G095890	`PF01663`	Phosphodiest	225	298	3.4e-07	30.9
TkA06G095890	`PF00884`	Sulfatase	260	346	0.0021	18.1
TkA06G095890	`PF19316`	PIGO_PIGG	459	891	1.9e-29	103.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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