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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G095880
Reference: TK1151 Chr: Chr06 Coordinates: 25491319-25494822 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1555 bp · TkA06G095880|TK1151|cDNA

CAACAACTCACGCTCAATTCTCAATTCATGGCTAACATTTGTGTATGTGCGAGATTCAGGCCTCTAAATTCAAGAGAGGACGGCGAAGCTATATGCATTACACGCTCCGATTCTCAAAGTTTTTCTATCAAGGATGAGAAAGATGAACAGTATATGTTTAGCTTTGATAAGGTGTTCTATGAGGATTCTGAACAAGCTGACGTCTACGAATTTCTGGCTCGCCCTATCGTAAGAGATGCTGTTAATTCAATTAACGGTAC...

CDS

Download CDS FASTA

1458 bp · TkA06G095880|TK1151|CDS

ATGGCTAACATTTGTGTATGTGCGAGATTCAGGCCTCTAAATTCAAGAGAGGACGGCGAAGCTATATGCATTACACGCTCCGATTCTCAAAGTTTTTCTATCAAGGATGAGAAAGATGAACAGTATATGTTTAGCTTTGATAAGGTGTTCTATGAGGATTCTGAACAAGCTGACGTCTACGAATTTCTGGCTCGCCCTATCGTAAGAGATGCTGTTAATTCAATTAACGGTACAATCATCACATATGGACAGACAGGAGC...

Protein

Download Protein FASTA

485 aa · TkA06G095880|TK1151|PROTEIN

MANICVCARFRPLNSREDGEAICITRSDSQSFSIKDEKDEQYMFSFDKVFYEDSEQADVYEFLARPIVRDAVNSINGTIITYGQTGAGKTFTMEGANILEADNRKMGLLPRVVDELFNAINICGETTSYKIKLSMVEIYMERVRDLFDLSKDNIQIKEHKGNGILLSGVTEILILDGEEALKNLCSGISNRAVGETQMNAGSSRSHCIYIFTVQKEVTNEKRVSSGKLVLVDLAGSEKVEKTGAEGKVLEEAKTINKSLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G095880
TK1151 IDTkA06G095880
OH-1004 IDLXL04_024916
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.100
Protein coverage (%)TK1151 99.794 / OH-1004 99.807
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G095880
LocationChr06:25491319-25494822 (+)
DescriptionSimilar to KIN1: Kinesin-like protein KIN-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g63480 Kinesin-like motor protein that promotes synapsis and is required for proper crossover distribution in meiosis. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0117000 Kinesin-like motor protein that exhibits microtubule- stimulated ATPase activity. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024916 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007018 microtubule-based movement Biological Process
GO:0007052 mitotic spindle organization Biological Process
GO:0007129 homologous chromosome pairing at meiosis Biological Process
GO:0009555 pollen development Biological Process
GO:0009561 megagametogenesis Biological Process
GO:0030705 cytoskeleton-dependent intracellular transport Biological Process
GO:0048316 seed development Biological Process
GO:0051231 spindle elongation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005871 kinesin complex Cellular Component
GO:0005874 microtubule Cellular Component
GO:0005875 microtubule associated complex Cellular Component
KEGG gene cross-reference
ath:AT3G63480
ddi:DDB_G0280967
dosa:Os08g0117000
ncr:NCU09730
osa:4344521
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.664
Rank 1 · TkA06G095880 · TK1151
Nucleus0.274
Rank 2 · TkA06G095880 · TK1151
Cell membrane0.097
Rank 3 · TkA06G095880 · TK1151
Golgi apparatus0.080
Rank 4 · TkA06G095880 · TK1151
Mitochondrion0.079
Rank 5 · TkA06G095880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16796Microtub_bd3-146 aa
PF00225Kinesin9-330 aa
PF18994Prophage_tailD123-63 aa
PF15812MREG28-56 aa
PF00580UvrD-helicase68-94 aa
PF28879CCDC163171-202 aa
PF14780NEPRO_N238-260 aa
PF16796Microtub_bd247-278 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G095880PF16796Microtub_bd31466.6e-2382.0
TkA06G095880PF00225Kinesin93305.4e-102341.9
TkA06G095880PF18994Prophage_tailD123630.1612.8
TkA06G095880PF15812MREG28560.2612.3
TkA06G095880PF00580UvrD-helicase68940.03414.5
TkA06G095880PF28879CCDC1631712020.1313.3
TkA06G095880PF14780NEPRO_N2382600.08613.2
TkA06G095880PF16796Microtub_bd2472786.6e-2382.0
TkA06G095880PF00580UvrD-helicase3274710.03414.5
TkA06G095880PF04678MCU3273660.6510.8
TkA06G095880PF18538DUF56243423870.3411.7
TkA06G095880PF15812MREG3563680.2612.3
TkA06G095880PF14780NEPRO_N4034650.08613.2
TkA06G095880PF18538DUF56244034300.3411.7
TkA06G095880PF04678MCU4054810.6510.8
TkA06G095880PF16796Microtub_bd4104376.6e-2382.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GW44Arabidopsis thalianasp|Q8GW44|KN1_ARATH Kinesin-like protein KIN-156.400%Swiss-ProtHigh
F9W301Oryza sativa subsp. japonicasp|F9W301|KN1_ORYSJ Kinesin-like protein KIN-159.000%Swiss-ProtHigh

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