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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G090230
Reference: TK1151 Chr: Chr06 Coordinates: 24012794-24020534 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1303 bp · TkA06G090230|TK1151|cDNA

TTTAAAACCCGTGTTTGTAACTAAAAACAACCTGTAGGCATTTTTGGTTTCATTTCTTCTTAATCCAAGTTTTTAGATTTGCTCCAAGCTTTGGAGCTTCAATTTGATGGCAACTAATCTATCACTTTCGCGGGAAGCATCATGATATGACAAGAAATCGACAACTTTGACAAATTCCTCACAACCCAAACGAACGAATACTCGCCATTATTGTTTTGAAATCAAATTAAAACCCATAACCAGTTAACCACCCATCTTCA...

CDS

Download CDS FASTA

1644 bp · TkA06G090230|TK1151|CDS

ATGAAAAAACACACTCTTGTCTTCTCCCTTTTCCTACTTTTTAACCAAAATTTCTGTTTGGATCCTAGCTACGAAGCTTGTGTTCCAAAAAACTGTGGAGATGGGGGTAGCATTAGTTATCCATTTTTCATCACCGGTTTACAGGACTCGTCTTGTGGATACCCTGGATTTCAGCTCCACTGCAGCAATGAATCCTCTGTTATTCGGATCTCAGAAAACGACTTCATAGTTCAACATATTCATTATGAAAACAGCTCCCT...

Protein

Download Protein FASTA

547 aa · TkA06G090230|TK1151|PROTEIN

MKKHTLVFSLFLLFNQNFCLDPSYEACVPKNCGDGGSISYPFFITGLQDSSCGYPGFQLHCSNESSVIRISENDFIVQHIHYENSSLRLQYAAILPNGTEFCPSKIWNLTLAPNRFRIDNSSTAKVVLISNCSGILPVDLERYRIGSCEKSKELVMLADDRNLRNVTSSCGEGHEVVEMPVELSGEQGRSLVVDGGNYQEVVERGFVLRWSAADCGVCLSSGGRCGFNETTFGFRCFCPNRPHMVRCPQTGTRRKTLVIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G090230
TK1151 IDTkA06G090230
OH-1004 IDLXL04_021336
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)49.500
Protein coverage (%)TK1151 96.527 / OH-1004 80.967
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G090230
LocationChr06:24012794-24020534 (+)
DescriptionSimilar to LRK10L-1.2: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g38260 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1. No verified direct reference in this release
At1g66930 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7. No verified direct reference in this release
At1g66910 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5. No verified direct reference in this release
At1g66920 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4. No verified direct reference in this release
At1g67000 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021336 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0010089 xylem development Biological Process
GO:0042631 cellular response to water deprivation Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048573 photoperiodism, flowering Biological Process
GO:0071215 cellular response to abscisic acid stimulus Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G18390
ath:AT1G25390
ath:AT1G66880
ath:AT2G23450
ath:AT5G38210
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.869
Rank 1 · TkA06G090230 · TK1151
Endoplasmic reticulum0.082
Rank 2 · TkA06G090230 · TK1151
Cytoplasm0.081
Rank 3 · TkA06G090230 · TK1151
Nucleus0.051
Rank 4 · TkA06G090230 · TK1151
Lysosome / Vacuole0.026
Rank 5 · TkA06G090230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947GUB_WAK_bind27-89 aa
PF14380WAK_assoc162-240 aa
PF13947GUB_WAK_bind225-236 aa
PF16101PRIMA1239-298 aa
PF19330DNER_C254-286 aa
PF28456GP1BB_C257-288 aa
PF06734UL97258-305 aa
PF27946C1orf162258-291 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G090230PF13947GUB_WAK_bind27898.8e-1555.6
TkA06G090230PF14380WAK_assoc1622402.1e-1454.7
TkA06G090230PF13947GUB_WAK_bind2252368.8e-1555.6
TkA06G090230PF16101PRIMA12392980.002418.4
TkA06G090230PF19330DNER_C2542860.1812.7
TkA06G090230PF28456GP1BB_C2572880.1612.4
TkA06G090230PF06734UL972583050.04613.6
TkA06G090230PF27946C1orf1622582910.1512.6
TkA06G090230PF07714PK_Tyr_Ser-Thr2613193.5e-41142.0
TkA06G090230PF07714PK_Tyr_Ser-Thr3235223.5e-41142.0
TkA06G090230PF00069Pkinase3245272.8e-43148.9
TkA06G090230PF03109ABC13273510.001318.7
TkA06G090230PF06734UL974244740.04613.6
TkA06G090230PF03109ABC14354750.001318.7
TkA06G090230PF14531Kinase-like4415200.02614.5
TkA06G090230PF10140YukC4414740.1411.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FF31Arabidopsis thalianasp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.141.500%Swiss-ProtMedium
F4HQ23Arabidopsis thalianasp|F4HQ23|LRL27_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.740.200%Swiss-ProtMedium
F4HQ20Arabidopsis thalianasp|F4HQ20|LRL25_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.539.600%Swiss-ProtMedium
F4HQ22Arabidopsis thalianasp|F4HQ22|LRL24_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.442.400%Swiss-ProtMedium
Q3ECH2Arabidopsis thalianasp|Q3ECH2|LRL28_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.839.700%Swiss-ProtMedium

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