TkA06G088300 | RubberDandelionOmics

Gene overview

TkA06G088300

Reference: TK1151 Chr: Chr06 Coordinates: 23584120-23586166 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

309 bp · TkA06G088300|TK1151|cDNA

ATGGTATTTGCGGGGAGGCAGAAGAACAACAAGAATGCGGGAGAAGAATGGTATTTGGGGAAATACGAGATTGGAAGAACTCTTGGCGAAGGCAATTTCGGCAAGGTTAAATATACTAAAGACATTCAAACTCAACACTCTTTTGCTATCAAGATCATTGATAAAACCGGGATAAAAAGGGAGATTAGCGCACTGAAGCTTCTTAAACATCCTAACGTGGTTAGATTACACGAGGTTTTCTCTTATTCAGAAGGTAAGAA...

CDS

Download CDS FASTA

309 bp · TkA06G088300|TK1151|CDS

ATGGTATTTGCGGGGAGGCAGAAGAACAACAAGAATGCGGGAGAAGAATGGTATTTGGGGAAATACGAGATTGGAAGAACTCTTGGCGAAGGCAATTTCGGCAAGGTTAAATATACTAAAGACATTCAAACTCAACACTCTTTTGCTATCAAGATCATTGATAAAACCGGGATAAAAAGGGAGATTAGCGCACTGAAGCTTCTTAAACATCCTAACGTGGTTAGATTACACGAGGTTTTCTCTTATTCAGAAGGTAAGAA...

Protein

Download Protein FASTA

102 aa · TkA06G088300|TK1151|PROTEIN

MVFAGRQKNNKNAGEEWYLGKYEIGRTLGEGNFGKVKYTKDIQTQHSFAIKIIDKTGIKREISALKLLKHPNVVRLHEVFSYSEGKKCFEFVAFYSLKCFGF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G088300`
TK1151 ID	TkA06G088300
OH-1004 ID	LXL04_012716
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G088300

Location Chr06:23584120-23586166 (-)

Description Similar to CIPK1: CBL-interacting serine/threonine-protein kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17510`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`At1g48260`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0292200`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os05g0136200`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os07g0637000`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012716 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G17510

dosa:Os01g0292200

dosa:Os01g0536000

dosa:Os05g0136200

dosa:Os07g0637000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.496

Rank 1 · TkA06G088300 · TK1151

Nucleus0.482

Rank 2 · TkA06G088300 · TK1151

Cell membrane0.073

Rank 3 · TkA06G088300 · TK1151

Mitochondrion0.067

Rank 4 · TkA06G088300 · TK1151

Endoplasmic reticulum0.053

Rank 5 · TkA06G088300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase22-83 aa

PF07714PK_Tyr_Ser-Thr23-83 aa

PF06478CoV_RPol_N43-93 aa

PF20766DUF447_C49-69 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G088300	`PF00069`	Pkinase	22	83	3e-11	44.0
TkA06G088300	`PF07714`	PK_Tyr_Ser-Thr	23	83	6.4e-06	26.4
TkA06G088300	`PF06478`	CoV_RPol_N	43	93	0.1	12.3
TkA06G088300	`PF20766`	DUF447_C	49	69	0.098	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RWC9`	Arabidopsis thaliana	sp\|Q8RWC9\|CIPK1_ARATH CBL-interacting serine/threonine-protein kinase 1	60.200%	Swiss-Prot	High
`Q94C40`	Arabidopsis thaliana	sp\|Q94C40\|CIPKH_ARATH CBL-interacting serine/threonine-protein kinase 17	61.400%	Swiss-Prot	Medium
`Q9LGV5`	Oryza sativa subsp. japonica	sp\|Q9LGV5\|CIPK1_ORYSJ CBL-interacting protein kinase 1	64.300%	Swiss-Prot	Medium
`Q75L42`	Oryza sativa subsp. japonica	sp\|Q75L42\|CIPKH_ORYSJ CBL-interacting protein kinase 17	57.300%	Swiss-Prot	Medium
`Q0D4B2`	Oryza sativa subsp. japonica	sp\|Q0D4B2\|CIPKL_ORYSJ CBL-interacting protein kinase 21	60.000%	Swiss-Prot	Medium

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