LXL04_012716 | RubberDandelionOmics

Gene overview

LXL04_012716

Reference: OH-1004 Chr: Chr03 Coordinates: 17775239-17777355 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

336 bp · LXL04_012716|LXL04_012716|OH1004|cDNA

ATGGTATTTGCGGGGAGGCGGAAGAACAACAAGAATGCGGGAGAAGAATGGTATTTGGGGAAATACGAGATTGGAAGAACTCTTGGCGAAGGCAATTTCGGCAAGGTTAAATATACTAAAGACATTCAAACTCAACACTCTTTTGCTATCAAGATCATTGATAAAACCCGGGTAATAAAGCTCAAAATATCCGATCAGATAAAAAAGGAGATTAGCGCACTGAAGCTTCTTAAACATCCTAACGTGGTTAGGTTACACAA...

CDS

Download CDS FASTA

336 bp · LXL04_012716|LXL04_012716|OH1004|CDS

ATGGTATTTGCGGGGAGGCGGAAGAACAACAAGAATGCGGGAGAAGAATGGTATTTGGGGAAATACGAGATTGGAAGAACTCTTGGCGAAGGCAATTTCGGCAAGGTTAAATATACTAAAGACATTCAAACTCAACACTCTTTTGCTATCAAGATCATTGATAAAACCCGGGTAATAAAGCTCAAAATATCCGATCAGATAAAAAAGGAGATTAGCGCACTGAAGCTTCTTAAACATCCTAACGTGGTTAGGTTACACAA...

Protein

Download Protein FASTA

111 aa · LXL04_012716|LXL04_012716|OH1004|PROTEIN

MVFAGRRKNNKNAGEEWYLGKYEIGRTLGEGNFGKVKYTKDIQTQHSFAIKIIDKTRVIKLKISDQIKKEISALKLLKHPNVVRLHKVFSYSEGKKCFEFVAFYSLKCFGF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012716`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012716

Location Chr03:17775239-17777355 (+)

Description Similar to CIPK1: CBL-interacting serine/threonine-protein kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17510`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0292200`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os05g0136200`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os07g0637000`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os01g0536000`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012716 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G17510

dosa:Os01g0292200

dosa:Os01g0536000

dosa:Os05g0136200

dosa:Os07g0637000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.543

Rank 1 · LXL04_012716 · OH-1004

Nucleus0.372

Rank 2 · LXL04_012716 · OH-1004

Cell membrane0.099

Rank 3 · LXL04_012716 · OH-1004

Mitochondrion0.077

Rank 4 · LXL04_012716 · OH-1004

Endoplasmic reticulum0.065

Rank 5 · LXL04_012716 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase22-92 aa

PF07714.24PK_Tyr_Ser-Thr23-92 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012716	`PF00069.32`	Pkinase	22	92	5.6e-14	52.9
LXL04_012716	`PF07714.24`	PK_Tyr_Ser-Thr	23	92	1.4e-07	31.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RWC9`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 1	60.000%	Swiss-Prot	strong database homology
`Q9LGV5`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 1	65.714%	Swiss-Prot	moderate database homology
`Q75L42`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 17	60.526%	Swiss-Prot	moderate database homology
`Q0D4B2`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 21	50.526%	Swiss-Prot	strong database homology
`Q5JLD8`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 8	48.276%	Swiss-Prot	moderate database homology

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