RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G088110
Reference: TK1151 Chr: Chr06 Coordinates: 23498612-23500247 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

762 bp · TkA06G088110|TK1151|cDNA

AGCAAGAAATTTGCACCATCTTTCCGGAAGTCATCGTATTTTAGAAAGGGACGATATCATGGTCCAAGAAAAGAGATACTAAAGGAATGGAGACTTGGTATTACAGTCATCGAAGAAACAAAAGAAAATGGGTATCCATCGAATCCAGGGTCAGTCCAAAATCAAATAATGAATGCACTACACTTGGGAGAAAGAGGAAAGGCTTCCAATTTGCTGTCTCATATTGGCTACAAGAATCATATGTTGAAACCTAACAATTT...

CDS

Download CDS FASTA

762 bp · TkA06G088110|TK1151|CDS

AGCAAGAAATTTGCACCATCTTTCCGGAAGTCATCGTATTTTAGAAAGGGACGATATCATGGTCCAAGAAAAGAGATACTAAAGGAATGGAGACTTGGTATTACAGTCATCGAAGAAACAAAAGAAAATGGGTATCCATCGAATCCAGGGTCAGTCCAAAATCAAATAATGAATGCACTACACTTGGGAGAAAGAGGAAAGGCTTCCAATTTGCTGTCTCATATTGGCTACAAGAATCATATGTTGAAACCTAACAATTT...

Protein

Download Protein FASTA

253 aa · TkA06G088110|TK1151|PROTEIN

SKKFAPSFRKSSYFRKGRYHGPRKEILKEWRLGITVIEETKENGYPSNPGSVQNQIMNALHLGERGKASNLLSHIGYKNHMLKPNNFVKILEYCAHTPDPPFVLEIWRTMEEKGVDLDNKSHVFVIQALCKGGYIEQAFNLMNNCYIFPCVDKYNIILEALAKLKDVTYVGKCLDKMEHDMVGKNETTYTELLKFIVLQKNLSAVHSIWKEYAKYYNFNLISLREFIWAFTRLGDVESSYEAGGFSVPRRIHH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G088110
TK1151 IDTkA06G088110
OH-1004 IDLXL04_015188
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)88.700
Protein coverage (%)TK1151 98.814 / OH-1004 33.417
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G088110
LocationChr06:23498612-23500247 (+)
DescriptionSimilar to At1g76280: Pentatricopeptide repeat-containing protein At1g76280
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g76280 Pentatricopeptide repeat-containing protein At1g76280. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015188 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G63130
ath:AT1G63400
ath:AT1G76280
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.782
Rank 1 · TkA06G088110 · TK1151
Plastid0.112
Rank 2 · TkA06G088110 · TK1151
Nucleus0.067
Rank 3 · TkA06G088110 · TK1151
Cytoplasm0.046
Rank 4 · TkA06G088110 · TK1151
Cell membrane0.013
Rank 5 · TkA06G088110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR11-19 aa
PF29070MSC6_N39-174 aa
PF13812PPR_385-115 aa
PF17177PPR_long87-131 aa
PF23276TPR_2488-161 aa
PF13041PPR_2103-131 aa
PF01535PPR103-115 aa
PF13041PPR_2125-143 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G088110PF01535PPR11199.1e-0523.2
TkA06G088110PF29070MSC6_N391749.6e-0625.7
TkA06G088110PF13812PPR_3851153.5e-0627.7
TkA06G088110PF17177PPR_long871310.0002721.1
TkA06G088110PF23276TPR_24881612.8e-0628.0
TkA06G088110PF13041PPR_21031312.2e-0834.8
TkA06G088110PF01535PPR1031159.1e-0523.2
TkA06G088110PF13041PPR_21251432.2e-0834.8
TkA06G088110PF01535PPR1251439.1e-0523.2
TkA06G088110PF12854PPR_11251430.03714.5
TkA06G088110PF13812PPR_31351613.5e-0627.7
TkA06G088110PF13041PPR_21491942.2e-0834.8
TkA06G088110PF23276TPR_241542112.8e-0628.0
TkA06G088110PF01535PPR1541799.1e-0523.2
TkA06G088110PF12854PPR_11541630.03714.5
TkA06G088110PF17177PPR_long1652410.0002721.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SGQ6Arabidopsis thalianasp|Q9SGQ6|PP126_ARATH Pentatricopeptide repeat-containing protein At1g7628043.800%Swiss-ProtMedium

JBrowse

View in Genome Browser