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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G086150
Reference: TK1151 Chr: Chr06 Coordinates: 23051981-23054606 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1564 bp · TkA06G086150|TK1151|cDNA

GGGAGAAGCTCAGATAAATCCAGTCAAGTTGAAGCTGGTTAGGTATAATTCGTTACCTTACATTCAACTTCGCTTCAATCAATTTCCCTGTTCGCAATCAGGTATTCTTCAACGCGTCTTTCTATATACTTGAATTTTGATTTCGCATATCCCTTACAAATGAATAAACTATCATTGTCGGCTATTCATTTATACATTCGGTAAGCCTCAGAAATGGATTAGATCATGTAGAATTATAAAATTGGAAGTGTTTTTGTGGT...

CDS

Download CDS FASTA

885 bp · TkA06G086150|TK1151|CDS

ATGGAGGCCACAGTTTCCCAAAGCTTACGGTTGACAACATGGACAAATTCAGATAATACGGTTCCAAAACTGACAAATTCCATGAGGTTATATACACGCTTTGAGAAAAAGAAAAACATTAATATGCTTAAATGCAATCATTTTGGAACTATAAAACCAGCAATTGGGCATCGATCAGCAGGGTTAAAGGCTTCATGTACTTCTCAAAACTCTCCAGCTTCAGTACTCAAGTCCGAAACTTCTATTACTGAAGAGGATTT...

Protein

Download Protein FASTA

294 aa · TkA06G086150|TK1151|PROTEIN

MEATVSQSLRLTTWTNSDNTVPKLTNSMRLYTRFEKKKNINMLKCNHFGTIKPAIGHRSAGLKASCTSQNSPASVLKSETSITEEDLLLKKKCEEIKPCLSGRCIYLVGMMGSGKTTIGQILSEVLDYSFFDSDKLIEQAAGGTAVADIFKLYGEGYFRDNETEVLHKLSLMHGLVISTGGGAVVRPINWKYMHKGITVFIDVPLDTLAQRLTAVGTASRPLLHHGSGDAYNQTFRRLSKLWEERSECYTNASVRVSLER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G086150
TK1151 IDTkA06G086150
OH-1004 IDLXL04_025035
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G086150
LocationChr06:23051981-23054606 (+)
DescriptionSimilar to SK: Shikimate kinase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g21940 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. No verified direct reference in this release
At4g39540 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0640600 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. No verified direct reference in this release
Os02g0749300 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025035 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008652 amino acid biosynthetic process Biological Process
GO:0009073 aromatic amino acid family biosynthetic process Biological Process
GO:0009423 chorismate biosynthetic process Biological Process
GO:0019632 shikimate metabolic process Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0004765 shikimate kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G21940
ath:AT4G39540
dosa:Os02g0749300
dosa:Os04g0640600
sly:544078
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.927
Rank 1 · TkA06G086150 · TK1151
Mitochondrion0.088
Rank 2 · TkA06G086150 · TK1151
Nucleus0.026
Rank 3 · TkA06G086150 · TK1151
Cytoplasm0.022
Rank 4 · TkA06G086150 · TK1151
Cell membrane0.011
Rank 5 · TkA06G086150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00004AAA21-40 aa
PF03193RsgA_GTPase89-125 aa
PF02367TsaE99-127 aa
PF29256EGF_Epiregulin99-110 aa
PF13191AAA_16101-126 aa
PF00005ABC_tran101-127 aa
PF01583APS_kinase102-127 aa
PF13401AAA_22102-136 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G086150PF00004AAA21400.1713.0
TkA06G086150PF03193RsgA_GTPase891250.212.2
TkA06G086150PF02367TsaE991270.04314.5
TkA06G086150PF29256EGF_Epiregulin991100.2212.4
TkA06G086150PF13191AAA_161011260.1313.5
TkA06G086150PF00005ABC_tran1011270.1313.6
TkA06G086150PF01583APS_kinase1021270.01516.1
TkA06G086150PF13401AAA_221021360.1613.0
TkA06G086150PF18751Ploopntkinase31021280.2211.8
TkA06G086150PF01121CoaE1041600.005117.2
TkA06G086150PF13238AAA_181052163.2e-0731.6
TkA06G086150PF13671AAA_331051420.0007420.6
TkA06G086150PF00004AAA1051320.1713.0
TkA06G086150PF13207AAA_171081450.01316.6
TkA06G086150PF13189Cytidylate_kin21091440.0001223.0
TkA06G086150PF01712dNK1091320.01515.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJ05Arabidopsis thalianasp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic56.800%Swiss-ProtHigh
Q8GY88Arabidopsis thalianasp|Q8GY88|SK2_ARATH Shikimate kinase 2, chloroplastic49.000%Swiss-ProtMedium
Q7X7H9Oryza sativa subsp. japonicasp|Q7X7H9|SK3_ORYSJ Shikimate kinase 3, chloroplastic57.400%Swiss-ProtHigh
Q5NTH4Oryza sativa subsp. japonicasp|Q5NTH4|SK1_ORYSJ Shikimate kinase 1, chloroplastic61.200%Swiss-ProtHigh

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