TkA06G085160 | RubberDandelionOmics

Gene overview

TkA06G085160

Reference: TK1151 Chr: Chr06 Coordinates: 22756547-22757473 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

771 bp · TkA06G085160|TK1151|cDNA

ATGTCCTTAACCCTAAATCTCGTCTCCGGCACTCTACTATCTCACACAAGCTCCGCAACCATCTTCACACCTCCTGACTCCATCTTCACCGCCTTCGGTCAACCTAATATGTCTGTCCTTCAACTCCACATTTCACCATTAGGTTTCTCCTTTCCTGGTCTCCGTTCCCTTGATCTTGGCACCAAAATCCCCACTATGTCCTCCGAGAACTACCTCACTATTACCACTCCTTCGTCATCTGATCCGGTTTCTCTAAACAA...

CDS

Download CDS FASTA

771 bp · TkA06G085160|TK1151|CDS

ATGTCCTTAACCCTAAATCTCGTCTCCGGCACTCTACTATCTCACACAAGCTCCGCAACCATCTTCACACCTCCTGACTCCATCTTCACCGCCTTCGGTCAACCTAATATGTCTGTCCTTCAACTCCACATTTCACCATTAGGTTTCTCCTTTCCTGGTCTCCGTTCCCTTGATCTTGGCACCAAAATCCCCACTATGTCCTCCGAGAACTACCTCACTATTACCACTCCTTCGTCATCTGATCCGGTTTCTCTAAACAA...

Protein

Download Protein FASTA

256 aa · TkA06G085160|TK1151|PROTEIN

MSLTLNLVSGTLLSHTSSATIFTPPDSIFTAFGQPNMSVLQLHISPLGFSFPGLRSLDLGTKIPTMSSENYLTITTPSSSDPVSLNNVKILGSPIFDDGSLIIFGIENFFDPNFTVSSTPAQIPSFNDCETPNGGGNSFSFHEAGNVHVLPCKISLKDLVNIENGTNLYSYLNGFKINVTRSGSTLKVNEVPIAFPDMYYSDWLVIHGVPAILSLPEPVEDDDEDNSDEDTFDTIPFHNSDGNEVSVPTASSRTEF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G085160`
TK1151 ID	TkA06G085160
OH-1004 ID	LXL04_021264
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	48.100
Protein coverage (%)	TK1151 100.000 / OH-1004 87.427 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA06G085160`
Location	Chr06:22756547-22757473 (-)
Description	Similar to FLA20: Putative fasciclin-like arabinogalactan protein 20
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_021264` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0005576 extracellular region Cellular Component GO:0005634 nucleus Cellular Component GO:0016020 membrane Cellular Component
KEGG gene cross-reference	ath:AT5G06920 ath:AT5G40940 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.253

Rank 1 · TkA06G085160 · TK1151

Cytoplasm0.221

Rank 2 · TkA06G085160 · TK1151

Extracellular0.164

Rank 3 · TkA06G085160 · TK1151

Endoplasmic reticulum0.159

Rank 4 · TkA06G085160 · TK1151

Nucleus0.148

Rank 5 · TkA06G085160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02469Fasciclin13-108 aa

PF27656Prd_NiFe_hyd_3_EhaI19-28 aa

PF27656Prd_NiFe_hyd_3_EhaI88-117 aa

PF02469Fasciclin147-213 aa

PF27656Prd_NiFe_hyd_3_EhaI211-230 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G085160	`PF02469`	Fasciclin	13	108	3e-07	31.4
TkA06G085160	`PF27656`	Prd_NiFe_hyd_3_EhaI	19	28	0.53	11.1
TkA06G085160	`PF27656`	Prd_NiFe_hyd_3_EhaI	88	117	0.53	11.1
TkA06G085160	`PF02469`	Fasciclin	147	213	3e-07	31.4
TkA06G085160	`PF27656`	Prd_NiFe_hyd_3_EhaI	211	230	0.53	11.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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