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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G084970
Reference: TK1151 Chr: Chr06 Coordinates: 22694618-22698555 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2456 bp · TkA06G084970|TK1151|cDNA

GTTTTTATAAACTTTAAATTGTTTGAAAGAAGACAATATATGTTGTCGTTAAAAATCGAGTACCCAGGTCGATTTATTGTTTAATTACTTTCAAAATACATTATCTAATTAAAGTTTGCCAAACTATGCTTTTGGTATAATTTGCTGTGTTGGATATCTACAGCCAACAAACTTTTAACTACTTGTCGTCTACCTTCATATAATATTCCTCCTTACAACTGTCTTCTCTTCTTTCACCAAAAACACGCATCTTCTTCTTC...

CDS

Download CDS FASTA

1824 bp · TkA06G084970|TK1151|CDS

ATGGCCGGCGACGACCCCACCGCCATTATGTCTGCAATTCAGTCTCTTCTCCGCCTAGTCCACGATGTAGCACGAACCTCCGCCACCGGATTCACAGGAGCATTCAAGAAGGACTGTACAGACCTTTGTAGAAAAGTAGCCTCGTTATCACATTTGTTGGAAGAAATTAGGGATTTTCAAGGTGATTTGATGCCGTTGGATATGGCGTGTTCTTCGTCATCGTCTCCTTCTTCCTTGTTTCAGCTAACCACCGCCCTTGA...

Protein

Download Protein FASTA

607 aa · TkA06G084970|TK1151|PROTEIN

MAGDDPTAIMSAIQSLLRLVHDVARTSATGFTGAFKKDCTDLCRKVASLSHLLEEIRDFQGDLMPLDMACSSSSSPSSLFQLTTALEAAKRLLLSAGSFDHTLSPDGAAEKFAFQFHCVTTNLEKALANLPYDQFDISEEVKEQVNLVRVQLKRAKERYGGQQDLVEFDSLQTINIHQDEIKSKLRDFTNENLSKDLEPVTESPVLKTNHVDEVNNVQTSPVIPADFLCPISLELIRDPVIVSTGQTYERSYIQRWINCG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G084970
TK1151 IDTkA06G084970
OH-1004 IDLXL04_025047
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 99.835 / OH-1004 99.835
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G084970
LocationChr06:22694618-22698555 (-)
DescriptionSimilar to PUB11: U-box domain-containing protein 11
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g23030 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g71020 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g46510 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g54850 Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes.
Structure and biochemical function of a prototypical Arabidopsis U-box domain.2004 · DOI: 10.1074/jbc.m405057200

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2ZLU6 Defense related protein that negatively regulates programmed cell death. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025047 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031648 protein destabilization Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G23030
ath:AT1G71020
ath:AT3G46510
dosa:Os06g0102700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.619
Rank 1 · TkA06G084970 · TK1151
Nucleus0.389
Rank 2 · TkA06G084970 · TK1151
Cell membrane0.114
Rank 3 · TkA06G084970 · TK1151
Endoplasmic reticulum0.046
Rank 4 · TkA06G084970 · TK1151
Lysosome / Vacuole0.039
Rank 5 · TkA06G084970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25368PUB10_N36-156 aa
PF04564U-box223-294 aa
PF11789zf-Nse226-266 aa
PF17741DUF5578295-392 aa
PF25786HEAT_GCN1_C316-347 aa
PF13513HEAT_EZ317-336 aa
PF23628ARM_LIN_C317-385 aa
PF25598ARM_PUB318-588 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G084970PF25368PUB10_N361561.3e-41142.8
TkA06G084970PF04564U-box2232945.1e-2072.1
TkA06G084970PF11789zf-Nse2262660.004317.6
TkA06G084970PF17741DUF55782953920.007216.5
TkA06G084970PF25786HEAT_GCN1_C3163470.004717.7
TkA06G084970PF13513HEAT_EZ3173360.0002122.5
TkA06G084970PF23628ARM_LIN_C3173850.009415.7
TkA06G084970PF25598ARM_PUB3185888.3e-2691.8
TkA06G084970PF24768ARM_ARMC53194932.1e-1557.6
TkA06G084970PF13646HEAT_23194100.003418.4
TkA06G084970PF02985HEAT3203440.3711.9
TkA06G084970PF00514Arm3223372.2e-34117.1
TkA06G084970PF30746TMCO63313870.0001721.2
TkA06G084970PF04826Arm_23414800.0006320.0
TkA06G084970PF00514Arm3493862.2e-34117.1
TkA06G084970PF13513HEAT_EZ3543790.0002122.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GUG9Arabidopsis thalianasp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 1155.100%Swiss-ProtHigh
Q9C9A6Arabidopsis thalianasp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 1047.600%Swiss-ProtMedium
Q9SNC6Arabidopsis thalianasp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 1344.500%Swiss-ProtMedium
Q8VZ40Arabidopsis thalianasp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 1436.800%Swiss-ProtMedium
A2ZLU6Oryza sativa subsp. indicasp|A2ZLU6|SL11_ORYSI Protein spotted leaf 1136.000%Swiss-ProtMedium

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