TkA06G082930 | RubberDandelionOmics

Gene overview

TkA06G082930

Reference: TK1151 Chr: Chr06 Coordinates: 22203200-22204598 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

823 bp · TkA06G082930|TK1151|cDNA

GGAGGGGAAAGGGAGGGCATGTAGCTATAAATGGTAATGATAGGAGCATGTAATTCTCATCCTTGTGTGTTGTTCAAGTTGTAGAGATCTGGAGAGATGGCACTCATTGGTAAGAAAGTTGCTCAATTTGAGATTAAATCAAAGTGTGATGTCTTTCACGAGTTATGGAAGACAGACCCACACCAAATTCCCAATGTGAGCCCGACTACCTACCAAAACTGTCAAACCCTTGAAGGTGAAGTTGGAACCGTGGGCTCTGT...

CDS

Download CDS FASTA

456 bp · TkA06G082930|TK1151|CDS

ATGGCACTCATTGGTAAGAAAGTTGCTCAATTTGAGATTAAATCAAAGTGTGATGTCTTTCACGAGTTATGGAAGACAGACCCACACCAAATTCCCAATGTGAGCCCGACTACCTACCAAAACTGTCAAACCCTTGAAGGTGAAGTTGGAACCGTGGGCTCTGTTCTCCTCTGGCATTATTTTCATGATGGGAAAGACAGTGTTGTAAAAACGCTAATCGAAGAAATCGACGAGGGAAAAAAGTCGGTCACGTTCAAGGC...

Protein

Download Protein FASTA

151 aa · TkA06G082930|TK1151|PROTEIN

MALIGKKVAQFEIKSKCDVFHELWKTDPHQIPNVSPTTYQNCQTLEGEVGTVGSVLLWHYFHDGKDSVVKTLIEEIDEGKKSVTFKALDGDLLKIYKIFVVHIHVDTYGSNNLVTWTIEYEKLSPDVPDPDKLFDFFEKVTKDIETHHLNN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G082930`
TK1151 ID	TkA06G082930
OH-1004 ID	LXL04_025071
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G082930

Location Chr06:22203200-22204598 (-)

Description Similar to Kirola

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g70830`	Can bind steroids (in vitro), and may also bind other types of hydrophobic ligands.	Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds.2009 · DOI: 10.1002/prot.22396
`At1g70850`	MLP-like protein 34.	No verified direct reference in this release
`At1g70840`	MLP-like protein 31.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025071 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002253 activation of immune response Biological Process

GO:0006952 defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G70830

ath:AT1G70840

ath:AT1G70850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.854

Rank 1 · TkA06G082930 · TK1151

Nucleus0.235

Rank 2 · TkA06G082930 · TK1151

Endoplasmic reticulum0.061

Rank 3 · TkA06G082930 · TK1151

Cell membrane0.049

Rank 4 · TkA06G082930 · TK1151

Mitochondrion0.038

Rank 5 · TkA06G082930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00407Bet_v_15-150 aa

PF27061Gasdermin_protease49-149 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G082930	`PF00407`	Bet_v_1	5	150	2.8e-36	125.4
TkA06G082930	`PF27061`	Gasdermin_protease	49	149	0.071	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SSK9`	Arabidopsis thaliana	sp\|Q9SSK9\|MLP28_ARATH MLP-like protein 28	40.000%	Swiss-Prot	Medium
`Q9SSK7`	Arabidopsis thaliana	sp\|Q9SSK7\|MLP34_ARATH MLP-like protein 34	38.400%	Swiss-Prot	Medium
`Q941R6`	Arabidopsis thaliana	sp\|Q941R6\|MLP31_ARATH MLP-like protein 31	39.100%	Swiss-Prot	Medium

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