Gene Card
Gene overview
cDNA / CDS / Protein Sequences
486 bp · TkA06G082540|TK1151|cDNA
ATGAATGCATCCCGACGAGTTTTCCCCAATGCTGCCCGTTGCTTTGTAGATGGCATATTACCGAAAATATCAGAAAGAATTGTAGGACATTATTCAATCAACAAGCTGACTGGGATTCTTTTCGGGCAATGTGGACTATACTCGTTGACTCTCCAACATTGTTGTGGAATCAAGAAACTAGAAACGTATTTGTCTTTCTTTCAGACGAATGCACCACGGGAACACTGGATGATTATGCCTTTAACAGGTCCTGAAGAATT...
486 bp · TkA06G082540|TK1151|CDS
ATGAATGCATCCCGACGAGTTTTCCCCAATGCTGCCCGTTGCTTTGTAGATGGCATATTACCGAAAATATCAGAAAGAATTGTAGGACATTATTCAATCAACAAGCTGACTGGGATTCTTTTCGGGCAATGTGGACTATACTCGTTGACTCTCCAACATTGTTGTGGAATCAAGAAACTAGAAACGTATTTGTCTTTCTTTCAGACGAATGCACCACGGGAACACTGGATGATTATGCCTTTAACAGGTCCTGAAGAATT...
Protein
Download Protein FASTA161 aa · TkA06G082540|TK1151|PROTEIN
MNASRRVFPNAARCFVDGILPKISERIVGHYSINKLTGILFGQCGLYSLTLQHCCGIKKLETYLSFFQTNAPREHWMIMPLTGPEEFQYHQMITISLVYDNHYVMVQLERDFSMPTIPAYLRRHKNSCVPRWEAVYKLRLELYQQLKPRDREQTFITIEDC
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G082540 |
|---|---|
| TK1151 ID | TkA06G082540 |
| OH-1004 ID | LXL04_025075 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 79.100 |
| Protein coverage (%) | TK1151 65.839 / OH-1004 18.768Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G082540 |
|---|---|
| Location | Chr06:22112411-22114000 (+) |
| Description | Similar to FRS5: Protein FAR1-RELATED SEQUENCE 5 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006633 fatty acid biosynthetic process Biological Process GO:0007623 circadian rhythm Biological Process GO:0009403 toxin biosynthetic process Biological Process GO:0009585 red, far-red light phototransduction Biological Process GO:0010017 red or far-red light signaling pathway Biological Process GO:0010218 response to far red light Biological Process GO:0032259 methylation Biological Process GO:0042753 positive regulation of circadian rhythm Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:1900056 negative regulation of leaf senescence Biological Process |
| KEGG gene cross-reference | ath:AT3G06250 ath:AT3G22170 ath:AT4G38180 ath:AT5G18960 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF09596MamL-1122-142 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G082540 | PF09596 | MamL-1 | 122 | 142 | 0.061 | 14.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.