TkA06G072020 | RubberDandelionOmics

Gene overview

TkA06G072020

Reference: TK1151 Chr: Chr06 Coordinates: 19289892-19290932 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

823 bp · TkA06G072020|TK1151|cDNA

CTAAAATCTCATGTGCTCTTCTTTTTCTTATTTTGGCTCATTTTTTTCAGAGGCGATAAAAGGGAACGTTCTCGAATTGGATAACAGACGGAAACAGAGATGGCGTCGGCCTCTTGTCTGATAATCTCTTCAACTATCCCATCGTCGTCTTCCTCAAAATGGGTTTCAATTCCCATGTCCTATTACCAAAATAACACTTGCTTTGAACGATTCCACCTCAGTAAAAGCTTCTCTAAATATACGATAAACCCTTCACGCCC...

CDS

Download CDS FASTA

525 bp · TkA06G072020|TK1151|CDS

ATGGCGTCGGCCTCTTGTCTGATAATCTCTTCAACTATCCCATCGTCGTCTTCCTCAAAATGGGTTTCAATTCCCATGTCCTATTACCAAAATAACACTTGCTTTGAACGATTCCACCTCAGTAAAAGCTTCTCTAAATATACGATAAACCCTTCACGCCCAGCTACAAGAAACCCTAAAACCCTAATTGTTAGAGCTGCCGAATACAAATTCCCAGACCCAATACCAGAATTCGCCGAAGCTGAGACTGAGAAATTCAG...

Protein

Download Protein FASTA

174 aa · TkA06G072020|TK1151|PROTEIN

MASASCLIISSTIPSSSSSKWVSIPMSYYQNNTCFERFHLSKSFSKYTINPSRPATRNPKTLIVRAAEYKFPDPIPEFAEAETEKFRSHLIDKLSKKDVFEDSVDEVVEICTEIFGKFMNAEYGGPGTLMVDPFWEMADTINESELPGGPQAARAAVKWAQNHVDNDWKEWNGD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G072020`
TK1151 ID	TkA06G072020
OH-1004 ID	LXL04_025248
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 98.851 / OH-1004 21.883 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G072020

Location Chr06:19289892-19290932 (-)

Description Similar to PRIN2: Protein PLASTID REDOX INSENSITIVE 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10522`	Involved in redox-mediated retrograde signaling to synchronize the expression of photosynthetic genes from both the nuclear and plastidic genomes, especially in excess light conditions.	The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus.2012 · DOI: 10.1111/j.1365-313x.2011.04865.x Plastid encoded RNA polymerase activity and expression of photosynthesis genes required for embryo and seed development in Arabidopsis.2014 · DOI: 10.3389/fpls.2014.00385

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0382400`	Required for the activity of the plastid-encoded RNA polymerase (PEP) and full expression of genes transcribed by PEP.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025248 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009642 response to light intensity Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0000427 plastid-encoded plastid RNA polymerase complex Cellular Component

GO:0042644 chloroplast nucleoid Cellular Component

GO:0042646 plastid nucleoid Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G10522

dosa:Os09g0382400

zma:100278908

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.986

Rank 1 · TkA06G072020 · TK1151

Mitochondrion0.018

Rank 2 · TkA06G072020 · TK1151

Nucleus0.018

Rank 3 · TkA06G072020 · TK1151

Cytoplasm0.012

Rank 4 · TkA06G072020 · TK1151

Cell membrane0.011

Rank 5 · TkA06G072020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9XIK0`	Arabidopsis thaliana	sp\|Q9XIK0\|PRIN2_ARATH Protein PLASTID REDOX INSENSITIVE 2, chloroplastic	75.900%	Swiss-Prot	Medium
`Q6H612`	Oryza sativa subsp. japonica	sp\|Q6H612\|PRIN2_ORYSJ Protein PLASTID REDOX INSENSITIVE 2, chloroplastic	54.100%	Swiss-Prot	Medium

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