TkA06G071690 | RubberDandelionOmics

Gene overview

TkA06G071690

Reference: TK1151 Chr: Chr06 Coordinates: 19198107-19198550 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

303 bp · TkA06G071690|TK1151|cDNA

ATGTATTCCGAAGTGTACACCATCTTATCAACTCTAGCTTCTTTCATAAATGGAGATGACCTAAGTTCTTTCAGTTTACGGTCTAAGAAGAGGCTGCCTTTTGTCCTCTACTCGGGGATTTTCGGATCGGCTTTTCAACACACGGTTCAAGCATGGAGCTTAATAAGGAGAGGTCCGGTTTTTGTTGCCATGTTTCATCCAATAGGAATGGTGATCTCAAGTTTAATTGGTGTTATATTTTTAGGAGATGGCGTCTATCT...

CDS

Download CDS FASTA

303 bp · TkA06G071690|TK1151|CDS

ATGTATTCCGAAGTGTACACCATCTTATCAACTCTAGCTTCTTTCATAAATGGAGATGACCTAAGTTCTTTCAGTTTACGGTCTAAGAAGAGGCTGCCTTTTGTCCTCTACTCGGGGATTTTCGGATCGGCTTTTCAACACACGGTTCAAGCATGGAGCTTAATAAGGAGAGGTCCGGTTTTTGTTGCCATGTTTCATCCAATAGGAATGGTGATCTCAAGTTTAATTGGTGTTATATTTTTAGGAGATGGCGTCTATCT...

Protein

Download Protein FASTA

100 aa · TkA06G071690|TK1151|PROTEIN

MYSEVYTILSTLASFINGDDLSSFSLRSKKRLPFVLYSGIFGSAFQHTVQAWSLIRRGPVFVAMFHPIGMVISSLIGVIFLGDGVYLGSLLGSVVVVIGF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G071690`
TK1151 ID	TkA06G071690
OH-1004 ID	LXL04_020936
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	58.600
Protein coverage (%)	TK1151 99.000 / OH-1004 27.966 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G071690

Location Chr06:19198107-19198550 (+)

Description Similar to At3g28050: WAT1-related protein At3g28050

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g28050`	WAT1-related protein At3g28050.	No verified direct reference in this release
`At5g40230`	WAT1-related protein At5g40230.	No verified direct reference in this release
`At5g40240`	WAT1-related protein At5g40240.	No verified direct reference in this release
`At3g28060`	WAT1-related protein At3g28060.	No verified direct reference in this release
`At1g21890`	WAT1-related protein At1g21890.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020936 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900425 negative regulation of defense response to bacterium Biological Process

GO:1902289 negative regulation of defense response to oomycetes Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G70260

ath:AT3G28050

ath:AT5G40210

ath:AT5G40230

ath:AT5G40240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.330

Rank 1 · TkA06G071690 · TK1151

Lysosome / Vacuole0.272

Rank 2 · TkA06G071690 · TK1151

Endoplasmic reticulum0.251

Rank 3 · TkA06G071690 · TK1151

Golgi apparatus0.087

Rank 4 · TkA06G071690 · TK1151

Cytoplasm0.069

Rank 5 · TkA06G071690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892EamA22-99 aa

PF00893Multi_Drug_Res28-92 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G071690	`PF00892`	EamA	22	99	6.9e-06	27.1
TkA06G071690	`PF00893`	Multi_Drug_Res	28	92	0.054	14.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94JU2`	Arabidopsis thaliana	sp\|Q94JU2\|WTR18_ARATH WAT1-related protein At3g28050	43.200%	Swiss-Prot	Medium
`F4KHA8`	Arabidopsis thaliana	sp\|F4KHA8\|WTR41_ARATH WAT1-related protein At5g40230	38.000%	Swiss-Prot	Medium
`Q9FL08`	Arabidopsis thaliana	sp\|Q9FL08\|WTR42_ARATH WAT1-related protein At5g40240	35.400%	Swiss-Prot	Medium
`F4IXT6`	Arabidopsis thaliana	sp\|F4IXT6\|WTR19_ARATH WAT1-related protein At3g28060	37.200%	Swiss-Prot	Medium
`F4HZQ7`	Arabidopsis thaliana	sp\|F4HZQ7\|WTR5_ARATH WAT1-related protein At1g21890	34.400%	Swiss-Prot	Medium

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