TkA06G070640 | RubberDandelionOmics

Gene overview

TkA06G070640

Reference: TK1151 Chr: Chr06 Coordinates: 18908408-18913048 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2010 bp · TkA06G070640|TK1151|cDNA

ATGGAAGCAACTCAAAAGAAAGGGCATGCATTTTCCTCTCTCCAGAATCTTAATATAAATAGTGTAGATTTTAACCCTGATTTCGTTTGGGGTGTCGCCACTTCTGCATATCAGATCGAAGGTGCTGCATCTGAAGGTGGTAAAGGTCAAAGCATATGGGATGTCTTCTGCCACAACCATCCTGATGCTATCGTCAATGGTGATAATGGAAACAATGGTACCAATGCTTATTTTAAATACAAGGAGGATGTGCAAATGAT...

CDS

Download CDS FASTA

2010 bp · TkA06G070640|TK1151|CDS

ATGGAAGCAACTCAAAAGAAAGGGCATGCATTTTCCTCTCTCCAGAATCTTAATATAAATAGTGTAGATTTTAACCCTGATTTCGTTTGGGGTGTCGCCACTTCTGCATATCAGATCGAAGGTGCTGCATCTGAAGGTGGTAAAGGTCAAAGCATATGGGATGTCTTCTGCCACAACCATCCTGATGCTATCGTCAATGGTGATAATGGAAACAATGGTACCAATGCTTATTTTAAATACAAGGAGGATGTGCAAATGAT...

Protein

Download Protein FASTA

669 aa · TkA06G070640|TK1151|PROTEIN

MEATQKKGHAFSSLQNLNINSVDFNPDFVWGVATSAYQIEGAASEGGKGQSIWDVFCHNHPDAIVNGDNGNNGTNAYFKYKEDVQMMKKMGVKAYRFSISWTRILPDGRLSTGLNKEGVDYYNNLINELLLNGITPYVTLFHWDTPESLEEEYMGFLSEKIIYDFTAYAEVCFREFGDRVKHWITINEPQSYASCGYASGDLAPGRGKDGVGDPGTEPYIVAHNLLLCHAVVVKLYRQRFQKSQGGKIGITLNVMFFEPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G070640`
TK1151 ID	TkA06G070640
OH-1004 ID	LXL04_015544
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	69.900
Protein coverage (%)	TK1151 69.357 / OH-1004 87.194 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G070640

Location Chr06:18908408-18913048 (+)

Description Similar to BGLU24: Beta-glucosidase 24

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0320200`	Beta-glucosidase 24.	No verified direct reference in this release
`Os04g0474800`	Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-galactoside, p-nitrophenyl beta-D-xyloside, p-nitrophenyl beta-D-fucoside, p-nitrophenyl beta-L-arabinoside, cello-oligosaccharides and laminaribiose.	No verified direct reference in this release
`UniProt: B8AVF0`	Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-galactoside, p-nitrophenyl beta-D-xyloside, p-nitrophenyl beta-D-fucoside, p-nitrophenyl beta-L-arabinoside, cello-oligosaccharides and laminaribiose.	No verified direct reference in this release
`Os04g0474900`	Beta-glucosidase 13.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015544 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0004338 glucan exo-1,3-beta-glucosidase activity Molecular Function

GO:0004565 beta-galactosidase activity Molecular Function

GO:0008422 beta-glucosidase activity Molecular Function

GO:0033907 beta-D-fucosidase activity Molecular Function

GO:0047701 beta-L-arabinosidase activity Molecular Function

GO:0080083 beta-gentiobiose beta-glucosidase activity Molecular Function

KEGG gene cross-reference

dosa:Os04g0474500

dosa:Os04g0474800

dosa:Os04g0474900

dosa:Os06g0320200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.264

Rank 1 · TkA06G070640 · TK1151

Cytoplasm0.262

Rank 2 · TkA06G070640 · TK1151

Endoplasmic reticulum0.174

Rank 3 · TkA06G070640 · TK1151

Lysosome / Vacuole0.117

Rank 4 · TkA06G070640 · TK1151

Nucleus0.116

Rank 5 · TkA06G070640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00232Glyco_hydro_123-493 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G070640	`PF00232`	Glyco_hydro_1	23	493	9.2e-157	522.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5Z9Z0`	Oryza sativa subsp. japonica	sp\|Q5Z9Z0\|BGL24_ORYSJ Beta-glucosidase 24	53.600%	Swiss-Prot	High
`Q7XKV4`	Oryza sativa subsp. japonica	sp\|Q7XKV4\|BGL12_ORYSJ Beta-glucosidase 12	55.100%	Swiss-Prot	Medium
`B8AVF0`	Oryza sativa subsp. indica	sp\|B8AVF0\|BGL12_ORYSI Beta-glucosidase 12	53.700%	Swiss-Prot	High
`Q7XKV2`	Oryza sativa subsp. japonica	sp\|Q7XKV2\|BGL13_ORYSJ Beta-glucosidase 13	54.600%	Swiss-Prot	High

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