Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1192 bp · TkA06G067540|TK1151|cDNA
TCATATTTATCTATCTCTCTCAACTCTCTATATAGTCAAAAGCTTATAAAATCCCACATCAAGTACTCAAAACGGCCGGCTTCTTTTTCTCTCATAAAATTGGGAAATTGTAAACAAGAAACACATAAATATGGGAAGGTCTCCCTGTTGTGAAAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGACGATCGCCTTATTGCTCACATCAAAGCTCACGGCGAAGGTTGCTGGCGTTCCCTACCCAAAGCCG...
942 bp · TkA06G067540|TK1151|CDS
ATGGGAAGGTCTCCCTGTTGTGAAAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGACGATCGCCTTATTGCTCACATCAAAGCTCACGGCGAAGGTTGCTGGCGTTCCCTACCCAAAGCCGCCGGACTCCTCCGTTGTGGTAAAAGCTGCCGTCTCCGGTGGATCAATTACCTCCGCCCTGATCTCAAGCGCGGCAATTTTACCGAAGAAGAAGATGAACTCATCATCAAACTCCATAGCCTCCTTGGCAA...
Protein
Download Protein FASTA313 aa · TkA06G067540|TK1151|PROTEIN
MGRSPCCEKAHTNKGAWTKEEDDRLIAHIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRLITDNTNNHHNNNITPTASAAANHNVNSSPEVTTTTTISFASAAPTPPSTTHHLIKHEQVEDDVKLRSDSPDRRKIKNTSSENQERCPDLNLELRIGPPRHHQSNAMSSSSYIQQHHQSIEFYQPLKTGGRNS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G067540 |
|---|---|
| TK1151 ID | TkA06G067540 |
| OH-1004 ID | LXL04_025321 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 90.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 97.465Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G067540 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:18066127-18067459 (-) | |||||||||
| Description | Similar to MYB308: Myb-related protein 308 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009611 response to wounding Biological Process GO:0010224 response to UV-B Biological Process GO:0010597 green leaf volatile biosynthetic process Biological Process GO:0045892 negative regulation of DNA-templated transcription Biological Process GO:1901141 regulation of lignin biosynthetic process Biological Process GO:1903086 negative regulation of sinapate ester biosynthetic process Biological Process GO:2000762 regulation of phenylpropanoid metabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0000976 transcription cis-regulatory region binding Molecular Function GO:0003677 DNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G38620 zma:100037768 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF09111SLIDE11-40 aaPF15963Myb_DNA-bind_712-33 aaPF00249Myb_DNA-binding14-61 aaPF23588HTH_CHD1_Hrp315-40 aaPF13921Myb_DNA-bind_617-76 aaPF09111SLIDE58-86 aaPF00249Myb_DNA-binding67-111 aaPF15963Myb_DNA-bind_769-114 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G067540 | PF09111 | SLIDE | 11 | 40 | 0.15 | 12.8 |
| TkA06G067540 | PF15963 | Myb_DNA-bind_7 | 12 | 33 | 0.024 | 15.2 |
| TkA06G067540 | PF00249 | Myb_DNA-binding | 14 | 61 | 2.1e-36 | 124.5 |
| TkA06G067540 | PF23588 | HTH_CHD1_Hrp3 | 15 | 40 | 0.0039 | 17.9 |
| TkA06G067540 | PF13921 | Myb_DNA-bind_6 | 17 | 76 | 6.3e-22 | 78.2 |
| TkA06G067540 | PF09111 | SLIDE | 58 | 86 | 0.15 | 12.8 |
| TkA06G067540 | PF00249 | Myb_DNA-binding | 67 | 111 | 2.1e-36 | 124.5 |
| TkA06G067540 | PF15963 | Myb_DNA-bind_7 | 69 | 114 | 0.024 | 15.2 |
| TkA06G067540 | PF13921 | Myb_DNA-bind_6 | 70 | 116 | 6.3e-22 | 78.2 |
| TkA06G067540 | PF15963 | Myb_DNA-bind_7 | 246 | 258 | 0.024 | 15.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.