TkA06G062220 | RubberDandelionOmics

Gene overview

TkA06G062220

Reference: TK1151 Chr: Chr06 Coordinates: 16795215-16796483 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

906 bp · TkA06G062220|TK1151|cDNA

ATGGACCTTGTCTCATTGCTACGAGCAGCATGGATCGTTATTATTTTCCCGATTGTTGTAGCCTTTGTCCCATTGCCTGGAATTCGATGGCTTAACACAACTCTCTTGCACATGTCAGAGAGAGGCAAGATTTTGCAACTTAATTCTAAACTAACCGTTCCTCAAAGATTCTTCTTGCACTTTTATGTGGTGGCCATTTTATGGACGACACTTTTGCTTGTTGGAGTGTGGTCTTATGCAACCGGAGGAGGTTCCCATGA...

CDS

Download CDS FASTA

414 bp · TkA06G062220|TK1151|CDS

ATGGACCTTGTCTCATTGCTACGAGCAGCATGGATCGTTATTATTTTCCCGATTGTTGTAGCCTTTGTCCCATTGCCTGGAATTCGATGGCTTAACACAACTCTCTTGCACATGTCAGAGAGAGGCAAGATTTTGCAACTTAATTCTAAACTAACCGTTCCTCAAAGATTCTTCTTGCACTTTTATGTGGTGGCCATTTTATGGACGACACTTTTGCTTGTTGGAGTGTGGTCTTATGCAACCGGAGGAGGTTCCCATGA...

Protein

Download Protein FASTA

137 aa · TkA06G062220|TK1151|PROTEIN

MDLVSLLRAAWIVIIFPIVVAFVPLPGIRWLNTTLLHMSERGKILQLNSKLTVPQRFFLHFYVVAILWTTLLLVGVWSYATGGGSHDSYDVWLPVFLLVLMELHVFRRFYMRQSMFLTTVNQLECTSLFILWAYFSI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G062220`
TK1151 ID	TkA06G062220
OH-1004 ID	LXL04_025387
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	97.800
Protein coverage (%)	TK1151 67.883 / OH-1004 34.191 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G062220

Location Chr06:16795215-16796483 (-)

Description Similar to PPRD1: Polyprenol reductase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g72590`	Plays a key role in early steps of protein N-linked glycosylation by being involved in the conversion of polyprenol into dolichol.	POLYPRENOL REDUCTASE2 Deficiency Is Lethal in Arabidopsis Due to Male Sterility.2015 · DOI: 10.1105/tpc.15.00463
`At2g16530`	Plays a key role in early steps of protein N-linked glycosylation by being involved in the conversion of polyprenol into dolichol.	POLYPRENOL REDUCTASE2 Deficiency Is Lethal in Arabidopsis Due to Male Sterility.2015 · DOI: 10.1105/tpc.15.00463

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XWN6`	Plays a key role in early steps of protein N-linked glycosylation by being involved in the conversion of polyprenol into dolichol (By similarity).	No verified direct reference in this release
`Os04g0576800`	Plays a key role in early steps of protein N-linked glycosylation by being involved in the conversion of polyprenol into dolichol (By similarity).	No verified direct reference in this release
`UniProt: B8B6G5`	Plays a key role in early steps of protein N-linked glycosylation by being involved in the conversion of polyprenol into dolichol (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025387 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006488 dolichol-linked oligosaccharide biosynthetic process Biological Process

GO:0016093 polyprenol metabolic process Biological Process

GO:0016095 polyprenol catabolic process Biological Process

GO:0043048 dolichyl monophosphate biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity Molecular Function

GO:0016229 steroid dehydrogenase activity Molecular Function

GO:0160198 polyprenal reductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G72590

ath:AT2G16530

dosa:Os04g0576800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.603

Rank 1 · TkA06G062220 · TK1151

Golgi apparatus0.153

Rank 2 · TkA06G062220 · TK1151

Nucleus0.147

Rank 3 · TkA06G062220 · TK1151

Cytoplasm0.103

Rank 4 · TkA06G062220 · TK1151

Mitochondrion0.062

Rank 5 · TkA06G062220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19667DUF61704-21 aa

PF19667DUF617036-72 aa

PF28509DUF8418107-124 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G062220	`PF19667`	DUF6170	4	21	0.33	11.5
TkA06G062220	`PF19667`	DUF6170	36	72	0.33	11.5
TkA06G062220	`PF28509`	DUF8418	107	124	0.087	13.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9CAH5`	Arabidopsis thaliana	sp\|Q9CAH5\|PPRD1_ARATH Polyprenal reductase 1	44.400%	Swiss-Prot	Medium
`Q9SI62`	Arabidopsis thaliana	sp\|Q9SI62\|PPRD2_ARATH Polyprenal reductase 2	42.400%	Swiss-Prot	Medium
`A2XWN6`	Oryza sativa subsp. indica	sp\|A2XWN6\|PPRD1_ORYSI Polyprenal reductase 1	41.600%	Swiss-Prot	Medium
`Q7XUH5`	Oryza sativa subsp. japonica	sp\|Q7XUH5\|PPRD1_ORYSJ Polyprenal reductase 1	41.600%	Swiss-Prot	Medium
`B8B6G5`	Oryza sativa subsp. indica	sp\|B8B6G5\|PPRD2_ORYSI Polyprenal reductase 2	40.400%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card