TkA06G061060 | RubberDandelionOmics

Gene overview

TkA06G061060

Reference: TK1151 Chr: Chr06 Coordinates: 16473809-16475411 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

938 bp · TkA06G061060|TK1151|cDNA

TGCACAGGACCAAAATCCCAACCAATAAATTCTCACCCTTTGTCCCAACCCCCAAATGCTTCATAAATGTTAACTATCTCCGATGAAGACCAGAACCGGCTGCCGGAGCAGAGCGAACAGGATCCGGCGACCCCAAGAGTGTTGTCAATCTTATCCGTTGTTCTGGAAAGACTTGTGAGCCGGAACGAGATATTGAGTTTAAGCAGCGGCGGAGGAGCACGGCTGGGGAAAAACTTGGAGGCGTTTCACGGTGCTAGACC...

CDS

Download CDS FASTA

678 bp · TkA06G061060|TK1151|CDS

ATGTTAACTATCTCCGATGAAGACCAGAACCGGCTGCCGGAGCAGAGCGAACAGGATCCGGCGACCCCAAGAGTGTTGTCAATCTTATCCGTTGTTCTGGAAAGACTTGTGAGCCGGAACGAGATATTGAGTTTAAGCAGCGGCGGAGGAGCACGGCTGGGGAAAAACTTGGAGGCGTTTCACGGTGCTAGACCGCCGGCAATCACTATACCCAAGTATCTAGACCGGATATACAAGTACACAAATTGTAGTCCGGCTTG...

Protein

Download Protein FASTA

225 aa · TkA06G061060|TK1151|PROTEIN

MLTISDEDQNRLPEQSEQDPATPRVLSILSVVLERLVSRNEILSLSSGGGARLGKNLEAFHGARPPAITIPKYLDRIYKYTNCSPACFVVGYVYIDRLVHRHPGSLVVPLNVHRLLVTSIMVAAKILDDVHYNNAFYARVGGVTNVELNRLEVEFLFMLDFELTVTSRVFESYCLHLEREMVLWNGTTAQKIERGIHTNTIEDIAEIPIEDMESFSSPLSNGVLT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G061060`
TK1151 ID	TkA06G061060
OH-1004 ID	LXL04_025408
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G061060

Location Chr06:16473809-16475411 (-)

Description Similar to CYCU1-1: Cyclin-U1-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g21870`	Cyclin-U1-1.	No verified direct reference in this release
`At2g44740`	Cyclin-U4-1.	No verified direct reference in this release
`At3g60550`	Cyclin-U2-2.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0563900`	Cyclin-P4-1.	No verified direct reference in this release
`UniProt: Q0J9W0`	Cyclin-P1-1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025408 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0019901 protein kinase binding Molecular Function

KEGG gene cross-reference

ath:AT2G44740

ath:AT2G45080

ath:AT3G21870

ath:AT3G60550

dosa:Os10g0563900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.744

Rank 1 · TkA06G061060 · TK1151

Cytoplasm0.304

Rank 2 · TkA06G061060 · TK1151

Mitochondrion0.033

Rank 3 · TkA06G061060 · TK1151

Plastid0.033

Rank 4 · TkA06G061060 · TK1151

Cell membrane0.027

Rank 5 · TkA06G061060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08613Cyclin25-163 aa

PF00134Cyclin_N72-164 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G061060	`PF08613`	Cyclin	25	163	6.2e-37	128.0
TkA06G061060	`PF00134`	Cyclin_N	72	164	8.7e-09	35.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LJ45`	Arabidopsis thaliana	sp\|Q9LJ45\|CCU11_ARATH Cyclin-U1-1	67.200%	Swiss-Prot	High
`O80513`	Arabidopsis thaliana	sp\|O80513\|CCU41_ARATH Cyclin-U4-1	48.500%	Swiss-Prot	Medium
`Q9M205`	Arabidopsis thaliana	sp\|Q9M205\|CCU22_ARATH Cyclin-U2-2	42.700%	Swiss-Prot	Medium
`Q7XC35`	Oryza sativa subsp. japonica	sp\|Q7XC35\|CCP41_ORYSJ Cyclin-P4-1	47.800%	Swiss-Prot	Medium
`Q0J9W0`	Oryza sativa subsp. japonica	sp\|Q0J9W0\|CCP11_ORYSJ Cyclin-P1-1	47.800%	Swiss-Prot	Medium

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