TkA06G060980 | RubberDandelionOmics

Gene overview

TkA06G060980

Reference: TK1151 Chr: Chr06 Coordinates: 16453762-16455237 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1368 bp · TkA06G060980|TK1151|cDNA

ATGAATGATAATTTCCTCCCATTTGTAAACACCTCAAAATACGTGTACACACCATCAGCATACGCATCCCTCGTGTCAACTCAGCACAACCCGAGGTGCTCAAATTCGACCGAGTCGCAAAAACCGATTGGGATCGTCACCCCAGAAAACACAGCCCAGATAAGAGCAGCTATTCTCTGTAGCCGAGAACACGGACTCCAGGTGAGGATTCGAAGCGGCGGCCATGACTATGAAGGACTATCCTACCTCTGCAAAACATC...

CDS

Download CDS FASTA

1368 bp · TkA06G060980|TK1151|CDS

ATGAATGATAATTTCCTCCCATTTGTAAACACCTCAAAATACGTGTACACACCATCAGCATACGCATCCCTCGTGTCAACTCAGCACAACCCGAGGTGCTCAAATTCGACCGAGTCGCAAAAACCGATTGGGATCGTCACCCCAGAAAACACAGCCCAGATAAGAGCAGCTATTCTCTGTAGCCGAGAACACGGACTCCAGGTGAGGATTCGAAGCGGCGGCCATGACTATGAAGGACTATCCTACCTCTGCAAAACATC...

Protein

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455 aa · TkA06G060980|TK1151|PROTEIN

MNDNFLPFVNTSKYVYTPSAYASLVSTQHNPRCSNSTESQKPIGIVTPENTAQIRAAILCSREHGLQVRIRSGGHDYEGLSYLCKTSFIIIDMRNLRSITIDINHETAWVQSGATLGELYYHIANKSQIHGFPAGICPSVGVGGHFSGGGFGAMVRKYGLAADNIIDAYLIDAKGRLVNRETMGEDLFWAIRGGGGASFGVIVSWKIKLVRVPPKVTVFNVHKNMSQQITKIVHRWQHVAHRVQNELNKSFPELGLQPED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G060980`
TK1151 ID	TkA06G060980
OH-1004 ID	LXL04_025412
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.100
Protein coverage (%)	TK1151 97.143 / OH-1004 84.303 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G060980

Location Chr06:16453762-16455237 (-)

Description Similar to FAD-OXR: Berberine bridge enzyme-like 22

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g20860`	Berberine bridge enzyme-like 22.	No verified direct reference in this release
`At5g44360`	Berberine bridge enzyme-like 23.	No verified direct reference in this release
`At5g44400`	Berberine bridge enzyme-like 26.	No verified direct reference in this release
`At1g30760`	Mediates oxidation of p-hydroxylated derivatives of cinnamyl alcohol (i.e. the monolignols p-coumaryl-, coniferyl-, and sinapyl alcohol) to their corresponding aldehydes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025412 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006007 glucose catabolic process Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009820 alkaloid metabolic process Biological Process

GO:0010729 positive regulation of hydrogen peroxide biosynthetic process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0031982 vesicle Cellular Component

KEGG gene cross-reference

ag:ADY15026

ath:AT4G20860

ath:AT5G44360

ath:AT5G44400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.341

Rank 1 · TkA06G060980 · TK1151

Lysosome / Vacuole0.285

Rank 2 · TkA06G060980 · TK1151

Cytoplasm0.174

Rank 3 · TkA06G060980 · TK1151

Endoplasmic reticulum0.146

Rank 4 · TkA06G060980 · TK1151

Cell membrane0.105

Rank 5 · TkA06G060980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565FAD_binding_442-178 aa

PF08031BBE396-453 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G060980	`PF01565`	FAD_binding_4	42	178	8.2e-29	100.8
TkA06G060980	`PF08031`	BBE	396	453	2.9e-20	72.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SUC6`	Arabidopsis thaliana	sp\|Q9SUC6\|BBE22_ARATH Berberine bridge enzyme-like 22	54.800%	Swiss-Prot	High
`Q9FKV2`	Arabidopsis thaliana	sp\|Q9FKV2\|BBE23_ARATH Berberine bridge enzyme-like 23	53.300%	Swiss-Prot	High
`Q9FKU8`	Arabidopsis thaliana	sp\|Q9FKU8\|BBE26_ARATH Berberine bridge enzyme-like 26	47.800%	Swiss-Prot	Medium
`Q93ZA3`	Arabidopsis thaliana	sp\|Q93ZA3\|BBE13_ARATH Monolignol oxidoreductase AtBBE-like 13	48.900%	Swiss-Prot	Medium

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