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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G060370
Reference: TK1151 Chr: Chr06 Coordinates: 16296500-16303645 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6057 bp · TkA06G060370|TK1151|cDNA

AGGAATTCCCCCCAAAAGCCAATTTCTTCCAACATTAGACTTTCCACTTTTTCCCAACATTTTTTTTCCGATCAACTATCTTTTGAGTTTTCCTTCAACTAAACCAATTCCCGTAAGCGATACGTTTTTTCTGCATTTGGGGGTCAGAAATGGGCTAGAAATTTCTTTTCTTTTTGTCTGAAATCAGGTTTGAATTATCTTGAAGGCAAAAAGATTTGTGGATTTCGTTTAAGTTTTGTTTCTGATTCTCAATTTGCAGC...

CDS

Download CDS FASTA

5586 bp · TkA06G060370|TK1151|CDS

ATGAGAAGGGCCGTGTTGTTGAATGGAAGCATTTTCTGCCCCAGAAAGCTTGGATATGTAGTAGTTTTTGTAGCTCTTTTTTGTGTGTTTTTGGTAAATCTTTGGGAAGGAAGTCATTGGATCCATAAAGACACTTGGAAACCTCAATTTATAGACGAAAATGAACCAACACTCTACTACCAAAAAGAGTTTGACCAACATAGTATAGCTAGCAAGTATTGTAGCCTATCTTACTTAAAGACCAAAACATCAACATCCAA...

Protein

Download Protein FASTA

1862 aa · TkA06G060370|TK1151|PROTEIN

MRRAVLLNGSIFCPRKLGYVVVFVALFCVFLVNLWEGSHWIHKDTWKPQFIDENEPTLYYQKEFDQHSIASKYCSLSYLKTKTSTSKDCEKEEWQENLSKSCHCDDHDHLEKRECTDLTHEDTANSPCVVKRSPIRALLTSPKELPNSYHRPTRKLIDLGEVGGAAILIGVVLTTAVATLGVFVLVLFYCGGRNARNALKTAAKGQKDNKVDVNLGSKGSKDEAGPPQKVMSEVSVDPPKTDNSVDGHRNTPGVLPGALP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G060370
TK1151 IDTkA06G060370
OH-1004 IDLXL04_025420
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.700
Protein coverage (%)TK1151 100.000 / OH-1004 99.837
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G060370
LocationChr06:16296500-16303645 (-)
DescriptionSimilar to FH5: Formin-like protein 5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g54650 Might be involved in the organization and polarity of the actin cytoskeleton. No verified direct reference in this release
UniProt: O23373 Acts as actin nucleation factor that directs the formation of actin cables and polarized growth in pollen tubes. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0545500 Formin-like protein 11. No verified direct reference in this release
Os04g0100300 Formin-like protein 18. No verified direct reference in this release
Os02g0161100 Formin-like protein 10. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025420 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009860 pollen tube growth Biological Process
GO:0009960 endosperm development Biological Process
GO:0030036 actin cytoskeleton organization Biological Process
GO:0030041 actin filament polymerization Biological Process
GO:0045010 actin nucleation Biological Process
GO:0048317 seed morphogenesis Biological Process
GO:0051017 actin filament bundle assembly Biological Process
GO:0099636 cytoplasmic streaming Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005856 cytoskeleton Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009524 phragmoplast Cellular Component
KEGG gene cross-reference
ath:AT5G54650
dosa:Os01g0897700
dosa:Os04g0100300
dosa:Os07g0545500
osa:4325107
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.699
Rank 1 · TkA06G060370 · TK1151
Cytoplasm0.144
Rank 2 · TkA06G060370 · TK1151
Nucleus0.101
Rank 3 · TkA06G060370 · TK1151
Endoplasmic reticulum0.076
Rank 4 · TkA06G060370 · TK1151
Plastid0.042
Rank 5 · TkA06G060370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02181FH2366-755 aa
PF14237GYF_2908-938 aa
PF00763THF_DHG_CYH956-995 aa
PF00763THF_DHG_CYH1010-1045 aa
PF00763THF_DHG_CYH1048-1099 aa
PF00763THF_DHG_CYH1140-1174 aa
PF00763THF_DHG_CYH1194-1231 aa
PF00763THF_DHG_CYH1298-1337 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G060370PF02181FH23667551.4e-97327.9
TkA06G060370PF14237GYF_29089380.000122.7
TkA06G060370PF00763THF_DHG_CYH9569950.1113.4
TkA06G060370PF00763THF_DHG_CYH101010450.1113.4
TkA06G060370PF00763THF_DHG_CYH104810990.1113.4
TkA06G060370PF00763THF_DHG_CYH114011740.1113.4
TkA06G060370PF00763THF_DHG_CYH119412310.1113.4
TkA06G060370PF00763THF_DHG_CYH129813370.1113.4
TkA06G060370PF00763THF_DHG_CYH131813650.1113.4
TkA06G060370PF00763THF_DHG_CYH134513930.1113.4
TkA06G060370PF00763THF_DHG_CYH137214190.1113.4
TkA06G060370PF00763THF_DHG_CYH140114480.1113.4
TkA06G060370PF00763THF_DHG_CYH144214720.1113.4
TkA06G060370PF00763THF_DHG_CYH146014990.1113.4
TkA06G060370PF00763THF_DHG_CYH149815330.1113.4
TkA06G060370PF14237GYF_2154615640.000122.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94B77Arabidopsis thalianasp|Q94B77|FH5_ARATH Formin-like protein 557.800%Swiss-ProtLow
O23373Arabidopsis thalianasp|O23373|FH3_ARATH Formin-like protein 354.200%Swiss-ProtLow
Q0D5P3Oryza sativa subsp. japonicasp|Q0D5P3|FH11_ORYSJ Formin-like protein 1154.700%Swiss-ProtLow
Q6MWG9Oryza sativa subsp. japonicasp|Q6MWG9|FH18_ORYSJ Formin-like protein 1848.200%Swiss-ProtLow
Q6H7U3Oryza sativa subsp. japonicasp|Q6H7U3|FH10_ORYSJ Formin-like protein 1049.100%Swiss-ProtLow

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