TkA06G051220 | RubberDandelionOmics

Gene overview

TkA06G051220

Reference: TK1151 Chr: Chr06 Coordinates: 13904508-13905067 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

405 bp · TkA06G051220|TK1151|cDNA

ATGGCCTCCGATATGCCAGAAACTTCCAACGGCAAGCATGGGTTTTGTACCACCGGACTACCAAGCGACGCCATGGTTGATGTCGGCGACTTGACCTTCCATCTCCATAAGTTTCCTCTTATGGCTAAGAGCAAAAAGCTTAACGAGATGATGGCAGAACAAGAGACGAATGTCACAGTTAAAGCTACTAACCCGAGGGAATCTGAAGAAGATGAGCACGAAGAGATACAGGAAGAGAAAATAGCGGAGATGGCGGTTGA...

CDS

Download CDS FASTA

405 bp · TkA06G051220|TK1151|CDS

ATGGCCTCCGATATGCCAGAAACTTCCAACGGCAAGCATGGGTTTTGTACCACCGGACTACCAAGCGACGCCATGGTTGATGTCGGCGACTTGACCTTCCATCTCCATAAGTTTCCTCTTATGGCTAAGAGCAAAAAGCTTAACGAGATGATGGCAGAACAAGAGACGAATGTCACAGTTAAAGCTACTAACCCGAGGGAATCTGAAGAAGATGAGCACGAAGAGATACAGGAAGAGAAAATAGCGGAGATGGCGGTTGA...

Protein

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134 aa · TkA06G051220|TK1151|PROTEIN

MASDMPETSNGKHGFCTTGLPSDAMVDVGDLTFHLHKFPLMAKSKKLNEMMAEQETNVTVKATNPRESEEDEHEEIQEEKIAEMAVDEHCHITLPDFPGGSETFETAAKFCYAVKIELSAFNVAAIVQATNSCY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G051220`
TK1151 ID	TkA06G051220
OH-1004 ID	LXL04_025566
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.500
Protein coverage (%)	TK1151 98.507 / OH-1004 75.429 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G051220

Location Chr06:13904508-13905067 (+)

Description Similar to At5g66560: BTB/POZ domain-containing protein At5g66560

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g66560`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g30440`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g03250`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At3g50840`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g64330`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	Arabidopsis NPH3: A NPH1 photoreceptor-interacting protein essential for phototropism.1999 · DOI: 10.1126/science.286.5441.961 RPT2. A signal transducer of the phototropic response in Arabidopsis.2000 · DOI: 10.1105/tpc.12.2.225 RPT2 is a signal transducer involved in phototropic response and stomatal opening by association with phototropin 1 in Arabidopsis thaliana.2004 · DOI: 10.1105/tpc.019901 PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism.2006 · DOI: 10.1073/pnas.0603799103 The Arabidopsis PHYTOCHROME KINASE SUBSTRATE2 protein is a phototropin signaling element that regulates leaf flattening and leaf positioning.2010 · DOI: 10.1104/pp.109.150441

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025566 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G30440

ath:AT3G50840

ath:AT5G03250

ath:AT5G66560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.556

Rank 1 · TkA06G051220 · TK1151

Nucleus0.426

Rank 2 · TkA06G051220 · TK1151

Mitochondrion0.068

Rank 3 · TkA06G051220 · TK1151

Cell membrane0.052

Rank 4 · TkA06G051220 · TK1151

Endoplasmic reticulum0.040

Rank 5 · TkA06G051220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00651BTB20-61 aa

PF24824PH_SPT1633-81 aa

PF30081MAL13P1_147_C40-77 aa

PF16226DUF488545-85 aa

PF17496DUF543188-126 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G051220	`PF00651`	BTB	20	61	0.00035	21.4
TkA06G051220	`PF24824`	PH_SPT16	33	81	0.24	12.1
TkA06G051220	`PF30081`	MAL13P1_147_C	40	77	0.069	14.0
TkA06G051220	`PF16226`	DUF4885	45	85	0.15	11.6
TkA06G051220	`PF17496`	DUF5431	88	126	0.17	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94A73`	Arabidopsis thaliana	sp\|Q94A73\|Y5656_ARATH BTB/POZ domain-containing protein At5g66560	47.400%	Swiss-Prot	Medium
`Q9S9Q9`	Arabidopsis thaliana	sp\|Q9S9Q9\|Y1044_ARATH BTB/POZ domain-containing protein At1g30440	41.600%	Swiss-Prot	Medium
`Q9LYW0`	Arabidopsis thaliana	sp\|Q9LYW0\|Y5325_ARATH BTB/POZ domain-containing protein At5g03250	37.900%	Swiss-Prot	Medium
`Q8LPQ3`	Arabidopsis thaliana	sp\|Q8LPQ3\|Y3084_ARATH BTB/POZ domain-containing protein At3g50840	41.900%	Swiss-Prot	Medium
`Q9FMF5`	Arabidopsis thaliana	sp\|Q9FMF5\|RPT3_ARATH Root phototropism protein 3	32.800%	Swiss-Prot	Medium

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