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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G049310
Reference: TK1151 Chr: Chr06 Coordinates: 13351387-13353726 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2240 bp · TkA06G049310|TK1151|cDNA

ATCATTATCTAAAAGTGGTAAAATAAAAATATATTTAGTTTTTTTTATATGAAAAATATATCAATATTACAGAACTTATACACCCTTCTATAAATGGTATCATTACGTATCTAGCCTATTATATCCAACATCTATCAGTTCTCCGACGGTTCTCTTCTCCCTCCTCTTCGCTTTTCTCCCCCACTTGGACGTCCTTTTCTCGCCGTCCTCCACCTCCGACCATTTGTTCTCGCCTGTCACCAAACCCGACTTGCTTTCTC...

CDS

Download CDS FASTA

1419 bp · TkA06G049310|TK1151|CDS

ATGATTAACAAGCAATTTGCCATAAAATGCTCATCGTTGAGGCCTCAATTTGATTACCTCGTAAGCAAATGCAAAAGCATTAGACAATTTAAGCAACTGCATGCTCAAATTATCGTTCATGAAGGCTTTTTTCCTCATGAAACCTCACTTCCAGAATTGTGTAGGTTGGCGGCTATGTGTGCAGTTGAACCTCAAGGAAGCTTATCCTATGCTAAAACCATATTCGATCAGCATCCAAACCCCACCGCACATCTCTATAA...

Protein

Download Protein FASTA

472 aa · TkA06G049310|TK1151|PROTEIN

MINKQFAIKCSSLRPQFDYLVSKCKSIRQFKQLHAQIIVHEGFFPHETSLPELCRLAAMCAVEPQGSLSYAKTIFDQHPNPTAHLYNALIRGFSASPNQSQEAILLFRQMLRNGLGPNNMTFPFLIKSCTVSSSIKFGILVHTHVLKCGLESDVYVQSSLIKFYSDAKCLPSAKKLFDAHHERDIVCWNSMLNAYVKSGQMNLARQVFDQMPHRDVISWNSMINGYGIIGRAHEAKKLFDEMPERNIVSWNSILAGYAKC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G049310
TK1151 IDTkA06G049310
OH-1004 IDLXL04_025608
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 92.373 / OH-1004 78.276
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G049310
LocationChr06:13351387-13353726 (-)
DescriptionSimilar to PCMP-E27: Pentatricopeptide repeat-containing protein At3g29230
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g29230 Pentatricopeptide repeat-containing protein At3g29230. No verified direct reference in this release
At2g22410 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial. No verified direct reference in this release
At2g29760 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At2g34400 Pentatricopeptide repeat-containing protein At2g34400. No verified direct reference in this release
At3g26630 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025608 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G22410
ath:AT2G29760
ath:AT3G29230
ath:AT5G37570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.731
Rank 1 · TkA06G049310 · TK1151
Plastid0.145
Rank 2 · TkA06G049310 · TK1151
Nucleus0.043
Rank 3 · TkA06G049310 · TK1151
Cytoplasm0.040
Rank 4 · TkA06G049310 · TK1151
Cell membrane0.006
Rank 5 · TkA06G049310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06239ECSIT_N67-126 aa
PF22330Rib_mS39_PPR70-93 aa
PF29070MSC6_N72-98 aa
PF12854PPR_180-93 aa
PF13041PPR_281-129 aa
PF23276TPR_2482-122 aa
PF13762MNE184-133 aa
PF01535PPR86-115 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G049310PF06239ECSIT_N671260.03814.0
TkA06G049310PF22330Rib_mS39_PPR70931.3e-0525.8
TkA06G049310PF29070MSC6_N72982.2e-1970.5
TkA06G049310PF12854PPR_180933.1e-35120.3
TkA06G049310PF13041PPR_2811299.7e-65215.2
TkA06G049310PF23276TPR_24821221.6e-1248.2
TkA06G049310PF13762MNE1841330.2312.2
TkA06G049310PF01535PPR861153.6e-55181.2
TkA06G049310PF13812PPR_3861296.2e-2691.0
TkA06G049310PF29070MSC6_N881332.2e-1970.5
TkA06G049310PF17177PPR_long1012112.5e-0834.3
TkA06G049310PF14559TPR_191011110.09513.8
TkA06G049310PF12854PPR_11131283.1e-35120.3
TkA06G049310PF13812PPR_31481786.2e-2691.0
TkA06G049310PF17049AEP11541960.0006919.5
TkA06G049310PF13041PPR_21551789.7e-65215.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LS72Arabidopsis thalianasp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g2923050.200%Swiss-ProtHigh
Q9SJZ3Arabidopsis thalianasp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial26.900%Swiss-ProtLow
O82380Arabidopsis thalianasp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic32.700%Swiss-ProtMedium
O64705Arabidopsis thalianasp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g3440024.900%Swiss-ProtLow
Q38959Arabidopsis thalianasp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630, chloroplastic34.400%Swiss-ProtMedium

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