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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G048250
Reference: TK1151 Chr: Chr06 Coordinates: 13094988-13098473 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1813 bp · TkA06G048250|TK1151|cDNA

GTTTTTAACTACTAAATTTTATGTTTTTACAGCTACTAATTATTAATTGTAGTAATCACTTACCTGTTTCTAGCTACTTTGATCTTTTATATAAAAAAAAGGAAAATACATTTGTTACGGCACAACACCTCTTTGCAGAAAAGGACCGAATGTCACCGTATCGATCTAGCAAGTGTGAGAAAAGCGACCAGCTGACAGTTTCTTTTTACTGCTATGGCTACCAATGGCGCTTCTCTGAGAGATGAAGGTGGGGTTAATGC...

CDS

Download CDS FASTA

1425 bp · TkA06G048250|TK1151|CDS

ATGGCTACCAATGGCGCTTCTCTGAGAGATGAAGGTGGGGTTAATGCTACAGAAGCCAGTTTAGATAAAATTAAACGACAATTGGCATCTGGTTCGGGTAGAAATCTATTGCAGGGTCCTCTTCTTAAGCGATCTGAAACGCTGAGGAAATGGAACGAGAGATGGATAATCTTAGATCCAACAACAGGAAAAATGGAATACAAAATCCGGAGAAATGATCCTACAGTCAAAGGAACAATAACCTTTGATTCAAATAGCAC...

Protein

Download Protein FASTA

474 aa · TkA06G048250|TK1151|PROTEIN

MATNGASLRDEGGVNATEASLDKIKRQLASGSGRNLLQGPLLKRSETLRKWNERWIILDPTTGKMEYKIRRNDPTVKGTITFDSNSTIMTSPYNFHGLPKYDNCIIYIATPQKKEYFLCAETPGAARAWVATLHATQLVLRAHKEAVNSLAGNSSTKLGTVSAVVAAANSTALESSKEIETAMQIARRNALGSVLNKTPIDVPFDDLTIMKETLRVKDEELQNLSRDIRARDSTIKDLAEKLTETADAAQSAASAAHTMD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G048250
TK1151 IDTkA06G048250
OH-1004 IDLXL04_025624
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G048250
LocationChr06:13094988-13098473 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025624 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.532
Rank 1 · TkA06G048250 · TK1151
Cell membrane0.242
Rank 2 · TkA06G048250 · TK1151
Golgi apparatus0.214
Rank 3 · TkA06G048250 · TK1151
Nucleus0.148
Rank 4 · TkA06G048250 · TK1151
Endoplasmic reticulum0.087
Rank 5 · TkA06G048250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00169PH37-135 aa
PF15413PH_1142-134 aa
PF24610DUF7623195-247 aa
PF29026DUF4350_C198-229 aa
PF14881Tubulin_3201-305 aa
PF15905HMMR_N205-257 aa
PF22813TcaA_2nd208-260 aa
PF19610DUF6115209-264 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G048250PF00169PH371354.1e-0731.2
TkA06G048250PF15413PH_11421340.001719.5
TkA06G048250PF24610DUF76231952479.87.1
TkA06G048250PF29026DUF4350_C1982298.57.4
TkA06G048250PF14881Tubulin_32013050.7510.2
TkA06G048250PF15905HMMR_N2052570.510.5
TkA06G048250PF22813TcaA_2nd2082601.69.9
TkA06G048250PF19610DUF61152092642.99.0
TkA06G048250PF28422CCDC892102790.4710.5
TkA06G048250PF30842LEKR12102851.49.9
TkA06G048250PF01327Pep_deformylase2112820.04514.1
TkA06G048250PF04859DUF6412112500.2212.6
TkA06G048250PF21142A2M_bMG22122720.003318.0
TkA06G048250PF29026DUF4350_C2322798.57.4
TkA06G048250PF04859DUF6412552810.2212.6
TkA06G048250PF15905HMMR_N2603290.510.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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