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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G048220
Reference: TK1151 Chr: Chr06 Coordinates: 13080713-13082354 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1568 bp · TkA06G048220|TK1151|cDNA

TAAAAAGTAAAAAAGAACTTGAAAGTTAACCAGAGTGAAAAAACCCTAATTGCGAAGTACTACATGAAATTTCTCGGTTATCTCTACAGGGCATGTAGTGGTACATATGCTTCACGCGGTTATTCTTCCTTCAAATGCCTTTCCTCTGTTAAAACCAGTACAACTCTCAATTCTGCAGCCACCGACGAGAGCTTTAAATCCCGAAACCCTAGTAAGTTTCAAGCTATTGTCAAAACTTTCTGTAGATCCGATTATAGTGG...

CDS

Download CDS FASTA

765 bp · TkA06G048220|TK1151|CDS

ATGACCTTCTCACAAGACGCATATGATGTGTTCCATAAAATGCCCCGACGAAATCTCACATCGTGGGACACCATGATAACATGGCTGGCAAAAAAGGGTCACGGAGAAGACGCAATCGACATGTTCACAGAATTCAAAATTGCCGGATTAAAACCCGATAATCAAATGTTTCATGGTGTCTTTACGGCTTGTAGTGTCGTAGGAGACATGAAAGAAGGGCTATTGCATTTCGAATCAATGGTGAAGAATCACAATCTTGT...

Protein

Download Protein FASTA

254 aa · TkA06G048220|TK1151|PROTEIN

MTFSQDAYDVFHKMPRRNLTSWDTMITWLAKKGHGEDAIDMFTEFKIAGLKPDNQMFHGVFTACSVVGDMKEGLLHFESMVKNHNLVPSMDDYVRVVNMLGSSGYLNEALEFIENIPIKPNVEIWEILMNQSRVHGDLELEDRCAEIVNLLDPSRLDEQSKEGLIPKEKEKEKEKSWGIYLEVKHMRTKGYEFTVGDTSHPSEKIYSQLRYLKETMKEVGYLPNTSIILTDVDEEILLSHSERLALSLGLLTSD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G048220
TK1151 IDTkA06G048220
OH-1004 IDLXL04_039054
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)68.100
Protein coverage (%)TK1151 98.031 / OH-1004 41.385
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G048220
LocationChr06:13080713-13082354 (+)
DescriptionSimilar to PCMP-H63: Pentatricopeptide repeat-containing protein At4g32450, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g25580 Pentatricopeptide repeat-containing protein At2g25580. No verified direct reference in this release
At4g32450 Pentatricopeptide repeat-containing protein At4g32450, mitochondrial. No verified direct reference in this release
At2g34370 Pentatricopeptide repeat-containing protein At2g34370, mitochondrial. No verified direct reference in this release
At1g29710 Pentatricopeptide repeat-containing protein At1g29710, mitochondrial. No verified direct reference in this release
At2g22070 Pentatricopeptide repeat-containing protein At2g22070. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039054 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G29710
ath:AT2G15690
ath:AT2G25580
ath:AT2G34370
ath:AT4G32450
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.388
Rank 1 · TkA06G048220 · TK1151
Mitochondrion0.349
Rank 2 · TkA06G048220 · TK1151
Nucleus0.123
Rank 3 · TkA06G048220 · TK1151
Cytoplasm0.097
Rank 4 · TkA06G048220 · TK1151
Peroxisome0.013
Rank 5 · TkA06G048220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR5-18 aa
PF13041PPR_25-19 aa
PF17177PPR_long5-103 aa
PF12854PPR_16-14 aa
PF13041PPR_218-64 aa
PF12854PPR_118-44 aa
PF01535PPR21-49 aa
PF13812PPR_342-101 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G048220PF01535PPR5183.5e-1040.1
TkA06G048220PF13041PPR_25194.4e-1040.2
TkA06G048220PF17177PPR_long51030.1512.2
TkA06G048220PF12854PPR_16140.01615.6
TkA06G048220PF13041PPR_218644.4e-1040.2
TkA06G048220PF12854PPR_118440.01615.6
TkA06G048220PF01535PPR21493.5e-1040.1
TkA06G048220PF13812PPR_3421010.008416.9
TkA06G048220PF01535PPR60833.5e-1040.1
TkA06G048220PF13041PPR_262834.4e-1040.2
TkA06G048220PF01535PPR961143.5e-1040.1
TkA06G048220PF13041PPR_2971164.4e-1040.2
TkA06G048220PF12854PPR_1971140.01615.6
TkA06G048220PF13812PPR_31111300.008416.9
TkA06G048220PF12854PPR_11181300.01615.6
TkA06G048220PF20430Eplus_motif1912090.01715.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q680H3Arabidopsis thalianasp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g2558047.300%Swiss-ProtMedium
Q9SUU7Arabidopsis thalianasp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450, mitochondrial47.800%Swiss-ProtMedium
Q8S8Q7Arabidopsis thalianasp|Q8S8Q7|PP183_ARATH Pentatricopeptide repeat-containing protein At2g34370, mitochondrial42.500%Swiss-ProtMedium
Q9C6G2Arabidopsis thalianasp|Q9C6G2|PPR63_ARATH Pentatricopeptide repeat-containing protein At1g29710, mitochondrial41.500%Swiss-ProtMedium
Q9SHZ8Arabidopsis thalianasp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g2207032.500%Swiss-ProtMedium

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