TkA06G047490 | RubberDandelionOmics

Gene overview

TkA06G047490

Reference: TK1151 Chr: Chr06 Coordinates: 12865927-12870621 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1591 bp · TkA06G047490|TK1151|cDNA

AATAATCGTATCTTAACTAAAATTCGTAGATTTCGGGAAATCTGAACGATATAATCACTTTGAGTTTTAAAAAACGATGTAAACTCATTGACTCCTCGCTCTCTTCTTCGTTGCCGTCGCTCTCTTCTTCGTTGCCGCTTCATACCCTGCTCCGGCCGCCGGATTTCCTGAAATCGCTTCCGATTGAGCTTCTGAGAAGCCATGGGAGGAATCAAAAGAATAGTTCTGATCCTTACGGCGGTGATGTTGATGTTAGTGGT...

CDS

Download CDS FASTA

1218 bp · TkA06G047490|TK1151|CDS

ATGGGAGGAATCAAAAGAATAGTTCTGATCCTTACGGCGGTGATGTTGATGTTAGTGGTGGATGCGGGTGCCGGAAAAGATCGCATTTACAACAACGTTTCTGGTGAGAGACGTAATCTTCTGGCCAATGGCCTTGGAGTTACTCCACCGATGGGGTGGAATAGTTGGAATCACTTCGGCTGCAATATCAATGAATCCACGATTCGAGAAACCGCTGATGCTATTATTTCAACCGGTCTCGCTAAACTTGGATACAAGTA...

Protein

Download Protein FASTA

405 aa · TkA06G047490|TK1151|PROTEIN

MGGIKRIVLILTAVMLMLVVDAGAGKDRIYNNVSGERRNLLANGLGVTPPMGWNSWNHFGCNINESTIRETADAIISTGLAKLGYKYVNIDDCWAESTRDKQGNFVAKKSTFPSGIKALADYVHNKGLKLGIYTDSGSMTCSKKMPGSLGYEEQDAKTFASWGIDYLKYDNCYNEGIKPTVRYPIMTKALMNAGRPIFFSLCEWGDMHPALWASKVGNSWRTTNDIKDTWLSMMYIADMNEVYADYARPGGWNDPDMLEV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G047490`
TK1151 ID	TkA06G047490
OH-1004 ID	LXL04_025645
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G047490

Location Chr06:12865927-12870621 (-)

Description Similar to AGAL1: Alpha-galactosidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08380`	May regulate leaf (and possibly other organ) development by functioning in cell wall loosening and cell wall expansion.	No verified direct reference in this release
`At5g08370`	May regulate leaf (and possibly other organ) development by functioning in cell wall loosening and cell wall expansion.	An alpha-galactosidase with an essential function during leaf development.2007 · DOI: 10.1007/s00425-006-0350-9

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0493600`	Hydrolyzes melibiose, raffinose and stachyose in the following decreasing order of reactivity: raffinose, melibiose, stachyose.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025645 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009620 response to fungus Biological Process

GO:0009911 positive regulation of flower development Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0051682 galactomannan catabolic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0004557 alpha-galactosidase activity Molecular Function

GO:0052692 raffinose alpha-galactosidase activity Molecular Function

KEGG gene cross-reference

ath:AT5G08370

ath:AT5G08380

dosa:Os10g0493600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.458

Rank 1 · TkA06G047490 · TK1151

Lysosome / Vacuole0.192

Rank 2 · TkA06G047490 · TK1151

Cytoplasm0.149

Rank 3 · TkA06G047490 · TK1151

Endoplasmic reticulum0.060

Rank 4 · TkA06G047490 · TK1151

Nucleus0.049

Rank 5 · TkA06G047490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16499Melibiase_248-312 aa

PF02065Melibiase50-135 aa

PF17801Melibiase_C82-105 aa

PF02065Melibiase159-171 aa

PF17801Melibiase_C301-319 aa

PF17450Melibiase_2_C315-346 aa

PF17801Melibiase_C324-401 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G047490	`PF16499`	Melibiase_2	48	312	2.7e-78	263.9
TkA06G047490	`PF02065`	Melibiase	50	135	8.9e-07	28.9
TkA06G047490	`PF17801`	Melibiase_C	82	105	1.7e-18	67.2
TkA06G047490	`PF02065`	Melibiase	159	171	8.9e-07	28.9
TkA06G047490	`PF17801`	Melibiase_C	301	319	1.7e-18	67.2
TkA06G047490	`PF17450`	Melibiase_2_C	315	346	0.042	14.8
TkA06G047490	`PF17801`	Melibiase_C	324	401	1.7e-18	67.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FT97`	Arabidopsis thaliana	sp\|Q9FT97\|AGAL1_ARATH Alpha-galactosidase 1	72.200%	Swiss-Prot	High
`Q8RX86`	Arabidopsis thaliana	sp\|Q8RX86\|AGAL2_ARATH Alpha-galactosidase 2	66.700%	Swiss-Prot	High
`Q9FXT4`	Oryza sativa subsp. japonica	sp\|Q9FXT4\|AGAL_ORYSJ Alpha-galactosidase	65.700%	Swiss-Prot	High

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