TkA06G047470 | RubberDandelionOmics

Gene overview

TkA06G047470

Reference: TK1151 Chr: Chr06 Coordinates: 12861130-12863707 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1980 bp · TkA06G047470|TK1151|cDNA

CAACGTGAACACTACCACCTTCCTTACATTCCTTCAATCTTCATCTCACTCTCTTTCTCTCTCTCTCCATATATCTAAACATACCATCTCTATATATATATACACACACACATCATTTCTTCTTCATCAGCTTCCTTCTTCAACCCCATACCACAATCCACCACCATGGTCAACTCAAGACAAGTTTTTGCCACATTCTTGATTTTGACCATAATCAATGCATCATCTGCTTTTGACTACGGTCAAGCTCTCGACAAAAG...

CDS

Download CDS FASTA

1815 bp · TkA06G047470|TK1151|CDS

ATGGTCAACTCAAGACAAGTTTTTGCCACATTCTTGATTTTGACCATAATCAATGCATCATCTGCTTTTGACTACGGTCAAGCTCTCGACAAAAGCTTGTTGTTTTTCGAGGCTCAAAGGTCCGGAAAATTACCGCAAAATCAACGTGTGAAATGGCGTGGCGATTCTGGCCTCACTGATGGTTACCAACAAAAGGTGAATTTGGTGGGTGGGTATTATGATGCGGGTGACCATGTGAAGTTCGGGTTGCCAATGGCGTA...

Protein

Download Protein FASTA

605 aa · TkA06G047470|TK1151|PROTEIN

MVNSRQVFATFLILTIINASSAFDYGQALDKSLLFFEAQRSGKLPQNQRVKWRGDSGLTDGYQQKVNLVGGYYDAGDHVKFGLPMAYTVTMLSWGAIEYHKSMMDLNQMGHVLDSIKWGTDYFIKAHSQPNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDLEHPGSDLAGETAAAMAAASIAFRPYNSSYSDLLLVHAKQLFWFADRFRGLFTDSIPNAKEFYTSSGYNDELLWAATWLHRATKDESYLKYVVDNAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G047470`
TK1151 ID	TkA06G047470
OH-1004 ID	LXL04_025646
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 99.671 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G047470

Location Chr06:12861130-12863707 (-)

Description Similar to At1g48930: Endoglucanase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g48930`	Endoglucanase 5.	No verified direct reference in this release
`At4g11050`	Endoglucanase 19.	No verified direct reference in this release
`At1g64390`	Endoglucanase 6.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XYW8`	Endoglucanase 13.	No verified direct reference in this release
`Os04g0674800`	Endoglucanase 13.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025646 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0030245 cellulose catabolic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0008810 cellulase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G48930

ath:AT1G64390

ath:AT4G11050

dosa:Os04g0674800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.355

Rank 1 · TkA06G047470 · TK1151

Extracellular0.311

Rank 2 · TkA06G047470 · TK1151

Lysosome / Vacuole0.213

Rank 3 · TkA06G047470 · TK1151

Cytoplasm0.155

Rank 4 · TkA06G047470 · TK1151

Endoplasmic reticulum0.112

Rank 5 · TkA06G047470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00759Glyco_hydro_925-483 aa

PF00553CBM_2258-276 aa

PF09478CBM49516-594 aa

PF00553CBM_2519-593 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G047470	`PF00759`	Glyco_hydro_9	25	483	1.9e-166	555.5
TkA06G047470	`PF00553`	CBM_2	258	276	0.15	13.1
TkA06G047470	`PF09478`	CBM49	516	594	2.5e-22	79.7
TkA06G047470	`PF00553`	CBM_2	519	593	0.15	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M995`	Arabidopsis thaliana	sp\|Q9M995\|GUN5_ARATH Endoglucanase 5	66.200%	Swiss-Prot	High
`Q8L7I0`	Arabidopsis thaliana	sp\|Q8L7I0\|GUN19_ARATH Endoglucanase 19	51.700%	Swiss-Prot	High
`Q42059`	Arabidopsis thaliana	sp\|Q42059\|GUN6_ARATH Endoglucanase 6	52.000%	Swiss-Prot	High
`A2XYW8`	Oryza sativa subsp. indica	sp\|A2XYW8\|GUN13_ORYSI Endoglucanase 13	59.600%	Swiss-Prot	High
`Q0J930`	Oryza sativa subsp. japonica	sp\|Q0J930\|GUN13_ORYSJ Endoglucanase 13	59.400%	Swiss-Prot	High

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