TkA06G047340 | RubberDandelionOmics

Gene overview

TkA06G047340

Reference: TK1151 Chr: Chr06 Coordinates: 12816705-12817336 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

564 bp · TkA06G047340|TK1151|cDNA

ATTGGTGTAGGGATGATATGTCCATACCTCATAAACATCTCGTTGTTGCTTGGTACATTCCTTTCATGGGGGATCCTGTGGCCCATCATCGAGACAAAAGAAGGCGACTGGTACGAAGCAGGTCTCGAGCCCGGCAACTTCCATGGCATCCAAGGTTACAGGGTTTTCACCGCCATAGCCCTAATCCTCGGAGACGGACTCTACAACTTCATAAAAGTACTCGGAAACACCGGCCACAAGCTATGTAGCCAAATCAAGAG...

CDS

Download CDS FASTA

552 bp · TkA06G047340|TK1151|CDS

ATGATATGTCCATACCTCATAAACATCTCGTTGTTGCTTGGTACATTCCTTTCATGGGGGATCCTGTGGCCCATCATCGAGACAAAAGAAGGCGACTGGTACGAAGCAGGTCTCGAGCCCGGCAACTTCCATGGCATCCAAGGTTACAGGGTTTTCACCGCCATAGCCCTAATCCTCGGAGACGGACTCTACAACTTCATAAAAGTACTCGGAAACACCGGCCACAAGCTATGTAGCCAAATCAAGAGCAAAAAATCAAG...

Protein

Download Protein FASTA

184 aa · TkA06G047340|TK1151|PROTEIN

MICPYLINISLLLGTFLSWGILWPIIETKEGDWYEAGLEPGNFHGIQGYRVFTAIALILGDGLYNFIKVLGNTGHKLCSQIKSKKSSAVLPVGPDGEVASFDDQRRKEVFMKDQIPTWLAVMGYIIIAAIATMTLPRIFEPLKWYHVLLIYAFAPALAFCNAYGCGLTDWSLASTYGKLAIFVI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G047340`
TK1151 ID	TkA06G047340
OH-1004 ID	LXL04_025651
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 12.517 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G047340

Location Chr06:12816705-12817336 (-)

Description Similar to YSL7: Probable metal-nicotianamine transporter YSL7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65730`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release
`At1g48370`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0674600`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release
`Os04g0524500`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release
`Os04g0524600`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025651 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0016020 membrane Cellular Component

GO:0035673 oligopeptide transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G65730

dosa:Os04g0524600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.633

Rank 1 · TkA06G047340 · TK1151

Endoplasmic reticulum0.140

Rank 2 · TkA06G047340 · TK1151

Lysosome / Vacuole0.126

Rank 3 · TkA06G047340 · TK1151

Cytoplasm0.094

Rank 4 · TkA06G047340 · TK1151

Golgi apparatus0.055

Rank 5 · TkA06G047340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03169OPT1-183 aa

PF08404Baculo_p74_N53-104 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G047340	`PF03169`	OPT	1	183	1.6e-36	126.9
TkA06G047340	`PF08404`	Baculo_p74_N	53	104	0.22	11.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SHY2`	Arabidopsis thaliana	sp\|Q9SHY2\|YSL7_ARATH Probable metal-nicotianamine transporter YSL7	61.200%	Swiss-Prot	High
`Q6R3K4`	Arabidopsis thaliana	sp\|Q6R3K4\|YSL8_ARATH Probable metal-nicotianamine transporter YSL8	56.700%	Swiss-Prot	High
`Q0J932`	Oryza sativa subsp. japonica	sp\|Q0J932\|YSL10_ORYSJ Probable metal-nicotianamine transporter YSL10	60.400%	Swiss-Prot	High
`Q7XKF4`	Oryza sativa subsp. japonica	sp\|Q7XKF4\|YSL13_ORYSJ Probable metal-nicotianamine transporter YSL13	59.400%	Swiss-Prot	High
`Q5JQD7`	Oryza sativa subsp. japonica	sp\|Q5JQD7\|YSL12_ORYSJ Probable metal-nicotianamine transporter YSL12	58.200%	Swiss-Prot	High

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