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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G045730
Reference: TK1151 Chr: Chr06 Coordinates: 12415908-12421327 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3051 bp · TkA06G045730|TK1151|cDNA

TAACAATTCAAATTTCACTAAATAAACAGTTACCCAAATCATTTCAAGTTTTCAATGATATTCCCAATGAAATTTTTGACATTTCAATAAGAAATTTTAACCTTTCACCTCTAAAATCTCCAAACAAGATCACATAAAAAGGTCGAAAATTGCCATCAAATTACGACAGGAATTTTAACGAATCTTTCACCGCACTGTTCATCTCATAAAAAAATTCACCCTTTAATCGAACAATCACCACCGTCGTCGTGTCGTGGCCA...

CDS

Download CDS FASTA

699 bp · TkA06G045730|TK1151|CDS

ATGACCTTCAAGCGATCTGAACCTATAGTTGAAGAACGCAAATCATTCCATTGTCTGGCCTTCCCAGATTTAGCTAAGTATCTTCCTCCTACCCAAACAGAACAGGACGACCCTATGACTGCCTTCATCAAGCTCGATGATTCTCCCATGTTCCAAAAGCAGGTGCGTTACCTTGAACAGACAACAGATGAGCTCAAACTCCGTTGTCAAAAGCTACACAAAGGGAGCAAAAAGTACATGGATGGTCTTGGGGAAGCATG...

Protein

Download Protein FASTA

232 aa · TkA06G045730|TK1151|PROTEIN

MTFKRSEPIVEERKSFHCLAFPDLAKYLPPTQTEQDDPMTAFIKLDDSPMFQKQVRYLEQTTDELKLRCQKLHKGSKKYMDGLGEACNMDLIFADSVEAFGGGQDDPVSVSIGGPIMTKFVSAFREIETFKELLRSQVEHLLVDRLAQFLSEDLQDTKDSRKRLDKASHAYDQAREKVASLKKSTRDEVVVELEEDLQNSKSAFERSRFNLVNSLMNIEAKRNTHFWNLSVQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G045730
TK1151 IDTkA06G045730
OH-1004 IDLXL04_025678
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.800
Protein coverage (%)TK1151 97.414 / OH-1004 27.730
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G045730
LocationChr06:12415908-12421327 (-)
DescriptionSimilar to AGD2: ADP-ribosylation factor GTPase-activating protein AGD2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g60860 Probable GTPase-activating protein. No verified direct reference in this release
At1g10870 Probable GTPase-activating protein. No verified direct reference in this release
At5g13300 GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
A series of novel mutants of Arabidopsis thaliana that are defective in the formation of continuous vascular network: calling the auxin signal flow canalization hypothesis into question.2000 · DOI: 10.1242/dev.127.15.3197
VAN3 ARF-GAP-mediated vesicle transport is involved in leaf vascular network formation.2005 · DOI: 10.1242/dev.01716
At5g61980 Probable GTPase-activating protein (By similarity).
A class I ADP-ribosylation factor GTPase-activating protein is critical for maintaining directional root hair growth in Arabidopsis.2008 · DOI: 10.1104/pp.108.119529

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025678 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006897 endocytosis Biological Process
GO:0007010 cytoskeleton organization Biological Process
GO:0009733 response to auxin Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0010051 xylem and phloem pattern formation Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0030029 actin filament-based process Biological Process
GO:0032456 endocytic recycling Biological Process
GO:0048768 root hair cell tip growth Biological Process
GO:1990090 cellular response to nerve growth factor stimulus Biological Process
GO:0001726 ruffle Cellular Component
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G10870
ath:AT1G60860
ath:AT5G13300
ath:AT5G61980
rno:619382
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.697
Rank 1 · TkA06G045730 · TK1151
Cell membrane0.205
Rank 2 · TkA06G045730 · TK1151
Nucleus0.185
Rank 3 · TkA06G045730 · TK1151
Golgi apparatus0.101
Rank 4 · TkA06G045730 · TK1151
Lysosome / Vacuole0.071
Rank 5 · TkA06G045730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16746BAR_345-227 aa
PF31021RBSN_mid49-63 aa
PF28297CCDC3_C51-74 aa
PF28904ANGPTL853-72 aa
PF18247AvrM_N54-80 aa
PF22813TcaA_2nd55-78 aa
PF10455BAR_256-74 aa
PF03114BAR58-228 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G045730PF16746BAR_3452275.8e-2589.0
TkA06G045730PF31021RBSN_mid49630.1613.3
TkA06G045730PF28297CCDC3_C51740.5311.3
TkA06G045730PF28904ANGPTL853720.07613.7
TkA06G045730PF18247AvrM_N54800.001918.8
TkA06G045730PF22813TcaA_2nd55780.3312.0
TkA06G045730PF10455BAR_256740.006716.4
TkA06G045730PF03114BAR582283.6e-1453.7
TkA06G045730PF10455BAR_21171950.006716.4
TkA06G045730PF18247AvrM_N1281770.001918.8
TkA06G045730PF22813TcaA_2nd1281940.3312.0
TkA06G045730PF28904ANGPTL81322130.07613.7
TkA06G045730PF31021RBSN_mid1481870.1613.3
TkA06G045730PF28297CCDC3_C1521880.5311.3
TkA06G045730PF22813TcaA_2nd1822210.3312.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C6C3Arabidopsis thalianasp|Q9C6C3|AGD2_ARATH ADP-ribosylation factor GTPase-activating protein AGD265.400%Swiss-ProtHigh
Q9SMX5Arabidopsis thalianasp|Q9SMX5|AGD4_ARATH ADP-ribosylation factor GTPase-activating protein AGD463.800%Swiss-ProtHigh
Q5W7F2Arabidopsis thalianasp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating protein AGD355.700%Swiss-ProtHigh
Q9FIT8Arabidopsis thalianasp|Q9FIT8|AGD1_ARATH ADP-ribosylation factor GTPase-activating protein AGD153.000%Swiss-ProtHigh

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