TkA06G045380 | RubberDandelionOmics

Gene overview

TkA06G045380

Reference: TK1151 Chr: Chr06 Coordinates: 12300448-12301773 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1212 bp · TkA06G045380|TK1151|cDNA

ATGAAGCCGCTTCCAAAGTCTTCTATCTTCCTCTTAGTTTTAACTCTTTCATTTTCAATTTCCAGGGCAGCCTTATCTTCAATTCTCAATGCCACACCAGGTTCTGAAGATTTCATAAGCTGCATAAAATCCAACTCCAACAATGTCAGCTTTGTCTCTCAATTCACTTTCACCCCTGCCAATGCTTCTTTCTCACCCATTTGGCAAGTTGCAGTGCAAAACACTAGATTCCTTAAACCTTCCACTCCTAGGCCATCAGT...

CDS

Download CDS FASTA

1212 bp · TkA06G045380|TK1151|CDS

ATGAAGCCGCTTCCAAAGTCTTCTATCTTCCTCTTAGTTTTAACTCTTTCATTTTCAATTTCCAGGGCAGCCTTATCTTCAATTCTCAATGCCACACCAGGTTCTGAAGATTTCATAAGCTGCATAAAATCCAACTCCAACAATGTCAGCTTTGTCTCTCAATTCACTTTCACCCCTGCCAATGCTTCTTTCTCACCCATTTGGCAAGTTGCAGTGCAAAACACTAGATTCCTTAAACCTTCCACTCCTAGGCCATCAGT...

Protein

Download Protein FASTA

403 aa · TkA06G045380|TK1151|PROTEIN

MKPLPKSSIFLLVLTLSFSISRAALSSILNATPGSEDFISCIKSNSNNVSFVSQFTFTPANASFSPIWQVAVQNTRFLKPSTPRPSVIVTPVEDTLIQTTLFCAKKLGYELRIRSGGHDYEGLSYTADVPFVMLDFTNMRDIDVDVPNRFAWVQAGAVLGELYYAISQKTDTLYFPAGVCPTVGVGGYMGGAGYGNLLRKYGTAADNVVDVRFIDVNGNILNRKSMGEDLFWAIRGGGVSSFGIVLAWKLRLVPVPEKVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G045380`
TK1151 ID	TkA06G045380
OH-1004 ID	LXL04_025687
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	89.700
Protein coverage (%)	TK1151 94.293 / OH-1004 29.478 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G045380

Location Chr06:12300448-12301773 (+)

Description Similar to At5g44440: Berberine bridge enzyme-like 28

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g34790`	Required for endosperm development and polar nuclei fusion.	No verified direct reference in this release
`At5g44380`	Berberine bridge enzyme-like 24.	No verified direct reference in this release
`At4g20820`	Berberine bridge enzyme-like 18.	No verified direct reference in this release
`At1g30760`	Mediates oxidation of p-hydroxylated derivatives of cinnamyl alcohol (i.e. the monolignols p-coumaryl-, coniferyl-, and sinapyl alcohol) to their corresponding aldehydes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025687 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009651 response to salt stress Biological Process

GO:0016114 terpenoid biosynthetic process Biological Process

GO:1901696 cannabinoid biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016491 oxidoreductase activity Molecular Function

GO:0050328 tetrahydroberberine oxidase activity Molecular Function

GO:0071949 FAD binding Molecular Function

GO:0102778 delta9-tetrahydrocannabinolate synthase activity Molecular Function

KEGG gene cross-reference

ag:ADY15026

ag:BAC41356

ath:AT5G44440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.423

Rank 1 · TkA06G045380 · TK1151

Lysosome / Vacuole0.181

Rank 2 · TkA06G045380 · TK1151

Endoplasmic reticulum0.157

Rank 3 · TkA06G045380 · TK1151

Cytoplasm0.108

Rank 4 · TkA06G045380 · TK1151

Cell membrane0.082

Rank 5 · TkA06G045380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565FAD_binding_485-221 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G045380	`PF01565`	FAD_binding_4	85	221	1.3e-22	80.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O64743`	Arabidopsis thaliana	sp\|O64743\|BBE15_ARATH Monolignol oxidoreductase AtBBE-like 15	41.800%	Swiss-Prot	Medium
`Q9FKV0`	Arabidopsis thaliana	sp\|Q9FKV0\|BBE24_ARATH Berberine bridge enzyme-like 24	43.400%	Swiss-Prot	Medium
`Q9SVG5`	Arabidopsis thaliana	sp\|Q9SVG5\|BBE18_ARATH Berberine bridge enzyme-like 18	43.800%	Swiss-Prot	Medium
`Q93ZA3`	Arabidopsis thaliana	sp\|Q93ZA3\|BBE13_ARATH Monolignol oxidoreductase AtBBE-like 13	42.900%	Swiss-Prot	Medium

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