TkA06G042390 | RubberDandelionOmics

Gene overview

TkA06G042390

Reference: TK1151 Chr: Chr06 Coordinates: 11469584-11479658 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2030 bp · TkA06G042390|TK1151|cDNA

AAATTCCCCAAAAAGTGAAAATGTCCTACGTGTCGCCTACGTGGCACACTTTGCATCTGCAAACTTTACCTACCATACCGACCAGCCTTAGTAAGATTGACTTTTACTATTCATTGTAAGATTGTCTTTTACTATTCATTGTAAATATACTCATTTCCTGAAAATTGCTTTGCAAATATCTACTAACTTCAACTTTTGAGAAAATAATTGTTTTGGTTTTGGCTTTTTCCCTGCTGCTTCACACGCTAATCCACACCTAG...

CDS

Download CDS FASTA

1074 bp · TkA06G042390|TK1151|CDS

ATGTTACAGACTACTCTGATCGATATGGAGTGGAATTCCAGTCCCAAAAAGCAACAATCAACAGACTGTAATGAGGGAATCACAGACATTGATGGGTCTTTTAATTCATCAGCAAAAAGCTCGATATCTGAATCTTCATTGAAGGAAGCCATGAAAGGGTCAAAGTCGTCATTTCCATCGTTAGAAGCTTCGGTTTCCTCCTCTTCTGATCAATCATCCATCGGTTTAAAACTTGGTAAACGGACATACTTTGAGAACAA...

Protein

Download Protein FASTA

357 aa · TkA06G042390|TK1151|PROTEIN

MLQTTLIDMEWNSSPKKQQSTDCNEGITDIDGSFNSSAKSSISESSLKEAMKGSKSSFPSLEASVSSSSDQSSIGLKLGKRTYFENNNSLPPSVVKKVRLSSQNTPVPRCQVEGCNLNLSSAKDYHRKHKVCENHSKSLKVVVSGLERRFCQQCSRFHGLSEFDGKKRSCRRRLSDHNSRRRKPQQEAIQFNSRNLSSSFYDGREELSFVFNNQTKHGGHNVVLTHSLGTQFPNDVSMNRMMMSSKGTAAGVFDQGSNGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G042390`
TK1151 ID	TkA06G042390
OH-1004 ID	LXL04_017936
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	40.900
Protein coverage (%)	TK1151 69.188 / OH-1004 63.291 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G042390

Location Chr06:11469584-11479658 (-)

Description Similar to SPL12: Squamosa promoter-binding-like protein 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43270`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YGR5`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity).	No verified direct reference in this release
`Os06g0703500`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity).	No verified direct reference in this release
`UniProt: A2X0Q6`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity).	No verified direct reference in this release
`Os02g0139400`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017936 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010262 somatic embryogenesis Biological Process

GO:0010358 leaf shaping Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0090356 negative regulation of auxin metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0001216 DNA-binding transcription activator activity Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G27360

ath:AT1G27370

dosa:Os06g0703500

osa:4341986

osa:9270639

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.942

Rank 1 · TkA06G042390 · TK1151

Cytoplasm0.139

Rank 2 · TkA06G042390 · TK1151

Cell membrane0.027

Rank 3 · TkA06G042390 · TK1151

Endoplasmic reticulum0.014

Rank 4 · TkA06G042390 · TK1151

Plastid0.012

Rank 5 · TkA06G042390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03110SBP110-183 aa

PF21685Fungal_virus_P2_N182-237 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G042390	`PF03110`	SBP	110	183	2.7e-32	111.6
TkA06G042390	`PF21685`	Fungal_virus_P2_N	182	237	0.061	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9S840`	Arabidopsis thaliana	sp\|Q9S840\|SPL2_ARATH Squamosa promoter-binding-like protein 2	44.900%	Swiss-Prot	Medium
`A2YGR5`	Oryza sativa subsp. indica	sp\|A2YGR5\|SPL12_ORYSI Squamosa promoter-binding-like protein 12	46.200%	Swiss-Prot	Medium
`Q5Z818`	Oryza sativa subsp. japonica	sp\|Q5Z818\|SPL12_ORYSJ Squamosa promoter-binding-like protein 12	46.200%	Swiss-Prot	Medium
`A2X0Q6`	Oryza sativa subsp. indica	sp\|A2X0Q6\|SPL3_ORYSI Squamosa promoter-binding-like protein 3	64.300%	Swiss-Prot	Low
`A3A2Z8`	Oryza sativa subsp. japonica	sp\|A3A2Z8\|SPL3_ORYSJ Squamosa promoter-binding-like protein 3	64.300%	Swiss-Prot	Low

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