Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2388 bp · TkA06G041110|TK1151|cDNA
GATGAGTTGTACACATGCAATAAATATTTGTACTATATAAACATTCTACGTACTAAAAGTTTACCTTATATCTCAAATACACAAAGCAATAGGTAGGAGCTAAGTTCATGTGAGTTGATCCAAGTTTCAACCATGGAGTTAACTGGAAATGACAGTTTCACCCCTCAATCTTCATCCACCGAACTATCACTCGAGCAAGAATTCATCATAAACAAGACTCTACTCACTCACGAAGCTAACCGCCATATTGTGGATTGCAA...
2082 bp · TkA06G041110|TK1151|CDS
ATGGAGTTAACTGGAAATGACAGTTTCACCCCTCAATCTTCATCCACCGAACTATCACTCGAGCAAGAATTCATCATAAACAAGACTCTACTCACTCACGAAGCTAACCGCCATATTGTGGATTGCAAGATTTTGCTTCAAGCCATGGAAAATGTCATGTTTTACGCATCTAATTCCACCAATGCTATCGATGCGTGTATTCTTGATGGTATCGAACATTTTGCTTCGAAGGAAACTTTGGATCATGCTATTTATAAAAT...
Protein
Download Protein FASTA693 aa · TkA06G041110|TK1151|PROTEIN
MELTGNDSFTPQSSSTELSLEQEFIINKTLLTHEANRHIVDCKILLQAMENVMFYASNSTNAIDACILDGIEHFASKETLDHAIYKISRAILCQCHETADMHTRTLILLEMLGNYRWDAKVVLILTAFAISYGEFRLILDVCAHSSLAASIATLKNLYWRNFEALRPQLKAMEMLIKEMVELAKWVVRFENLLPLGLVLCADPGCTLMADVKSQIYLATYWIFRSSLTSASQIRDLIGMKQENSNVITNAAWGLSSLALR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G041110 |
|---|---|
| TK1151 ID | TkA06G041110 |
| OH-1004 ID | LXL04_025797 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 98.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 90.775Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G041110 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:11110190-11113532 (+) | |||||||||
| Description | Similar to SEOC: Protein SIEVE ELEMENT OCCLUSION C | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0010088 phloem development Biological Process GO:0042742 defense response to bacterium Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0097218 sieve plate Cellular Component GO:0042803 protein homodimerization activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G67790 ath:AT3G01670 ath:AT3G01680 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14576SEO_N22-292 aaPF13017Maelstrom35-102 aaPF13408Zn_ribbon_recom196-207 aaPF13017Maelstrom312-320 aaPF13017Maelstrom354-375 aaPF14577SEO_C459-690 aaPF13408Zn_ribbon_recom484-506 aaPF13408Zn_ribbon_recom669-683 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G041110 | PF14576 | SEO_N | 22 | 292 | 2.8e-57 | 194.8 |
| TkA06G041110 | PF13017 | Maelstrom | 35 | 102 | 1.4 | 9.3 |
| TkA06G041110 | PF13408 | Zn_ribbon_recom | 196 | 207 | 2.0 | 9.6 |
| TkA06G041110 | PF13017 | Maelstrom | 312 | 320 | 1.4 | 9.3 |
| TkA06G041110 | PF13017 | Maelstrom | 354 | 375 | 1.4 | 9.3 |
| TkA06G041110 | PF14577 | SEO_C | 459 | 690 | 2.8e-52 | 178.2 |
| TkA06G041110 | PF13408 | Zn_ribbon_recom | 484 | 506 | 2.0 | 9.6 |
| TkA06G041110 | PF13408 | Zn_ribbon_recom | 669 | 683 | 2.0 | 9.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.